C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SOGA family member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000255330 SOGA3 9606 - 6:127438406-127519355 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000464495 SOGA3-003 127450187-127475473 nonsense_mediated_decay
  ENST00000473298 SOGA3-002 127444039-127476064 nonsense_mediated_decay
  ENST00000474293 SOGA3-004 127453870-127475694 processed_transcript
  ENST00000481848 SOGA3-001 127438406-127519001 nonsense_mediated_decay
  ENST00000556132 SOGA3-201 127438406-127519355 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonKidneyLungOvaryPlacentaTestisENST00000473298ENST00000481848ENST00000556132
Transcript ID Adipose Adrenal Brain Colon Kidney Lung Ovary Placenta Testis
ENST00000473298 0.985±0.00 0.207±0.00 7.831±3.56 2.117±0.00 0.197±0.10 0.931±0.00 0.250±0.13 0.101±0.03 4.202±1.46
ENST00000481848 N/A N/A 1.982±0.87 0.398±0.00 N/A 0.481±0.00 0.057±0.03 N/A N/A
ENST00000556132 N/A 0.077±0.00 N/A N/A N/A N/A 0.085±0.00 0.055±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001EL CIL_0001EL_0002 CGP 6:127438406-127519355

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005615 IEA extracellular space
GO:0010506 IEA regulation of autophagy
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063311 soga3a SOGA family member 3a protein_coding Danio_rerio
ENSDARG00000075455 soga3b SOGA family member 3b protein_coding Danio_rerio
ENSMUSG00000038916 Soga3 SOGA family member 3 protein_coding Mus_musculus

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