C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calpain, small subunit 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000256812 CAPNS2 9606 + 16:55566672-55567687 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000457326 CAPNS2-001 55566672-55567687 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000457326
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000457326 0.041±0.00 0.057±0.00 0.112±0.00 0.247±0.16 0.066±0.02 0.381±0.30 0.039±0.00 0.231±0.00 1.819±0.00 0.230±0.16 1.838±2.18 0.181±0.11 0.084±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WY CIL_0007WY_0001 VISTA 16:54995377-55596848
CIL_000988 CIL_000988_0001 VISTA 16:55084120-55684969
CIL_00098D CIL_00098D_0001 VISTA 16:55090504-55691826
CIL_0005P6 CIL_0005P6_0001 CGP 16:55389700-55586670
CIL_0000PT CIL_0000PT_0001 CGP 16:55508998-55586670
CIL_0005R5 CIL_0005R5_0001 CGP 16:55566672-55706192

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004198 IBA calcium-dependent cysteine-type endopeptidase activity
GO:0005509 IEA calcium ion binding
GO:0005737 IBA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006508 IBA proteolysis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013804 capns1b calpain, small subunit 1 b protein_coding Danio_rerio
ENSDARG00000035329 capns1a calpain, small subunit 1 a protein_coding Danio_rerio
ENSMUSG00000078144 Capns2 calpain, small subunit 2 protein_coding Mus_musculus

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