C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005R5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000256812-ENSG00000103546 CGP 9606 16:55566672-55706192
GeneTranscriptPositionBiotype
ENSG00000087253 (LPCAT2)
lysophosphatidylcholine acyltransferase 2 		ENST00000262134 (LPCAT2-001) 55508998-55586670 protein_coding
ENST00000562299 (LPCAT2-008) 55579018-55583237 retained_intron
ENST00000563095 (LPCAT2-005) 55545485-55574729 retained_intron
ENST00000564084 (LPCAT2-004) 55528493-55542028 protein_coding
ENST00000565056 (LPCAT2-007) 55556923-55583012 processed_transcript
ENST00000566375 (LPCAT2-006) 55549306-55551333 retained_intron
ENST00000566911 (LPCAT2-003) 55509072-55526058 retained_intron
ENST00000566915 (LPCAT2-002) 55532039-55586666 retained_intron
ENST00000615823 (LPCAT2-201) 55532039-55586662 protein_coding
ENSG00000103546 (SLC6A2)
solute carrier family 6 (neurotransmitter transporter), member 2 		ENST00000219833 (SLC6A2-201) 55656644-55706192 protein_coding
ENST00000379906 (SLC6A2-001) 55656440-55703788 protein_coding
ENST00000414754 (SLC6A2-003) 55656110-55703750 protein_coding
ENST00000561820 (SLC6A2-007) 55656618-55705648 protein_coding
ENST00000566163 (SLC6A2-006) 55656655-55702346 protein_coding
ENST00000567238 (SLC6A2-005) 55671671-55703791 protein_coding
ENST00000568529 (SLC6A2-009) 55656086-55694113 protein_coding
ENST00000568655 (SLC6A2-008) 55656254-55672131 protein_coding
ENST00000568943 (SLC6A2-004) 55655604-55702346 protein_coding
ENST00000574918 (SLC6A2-010) 55700274-55705853 protein_coding
ENSG00000256812 (CAPNS2)
calpain, small subunit 2 		ENST00000457326 (CAPNS2-001) 55566672-55567687 protein_coding
ENSG00000278928 (RP11-481F24.3)
 ENST00000624017 (RP11-481F24.3-001) 55704119-55706422 TEC

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_0005R5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000078144-ENSMUSG00000055368 CGP 10090 8:92901407-93001667
GeneTranscriptPositionBiotype
ENSMUSG00000033192 (Lpcat2)
lysophosphatidylcholine acyltransferase 2 		ENSMUST00000046290 (Lpcat2-001) 92855350-92919279 protein_coding
ENSMUST00000130471 (Lpcat2-002) 92855480-92870058 processed_transcript
ENSMUST00000151106 (Lpcat2-003) 92905918-92918068 processed_transcript
ENSMUSG00000055368 (Slc6a2)
solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2 		ENSMUST00000072939 (Slc6a2-201) 92961047-93001667 protein_coding
ENSMUST00000165470 (Slc6a2-202) 92960079-92998924 protein_coding
ENSMUSG00000078144 (Capns2)
calpain, small subunit 2 		ENSMUST00000104947 (Capns2-001) 92901407-92902407 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005R5_0001ENSG00000087253ENST00000262134ENST00000562299ENST00000563095ENST00000564084ENST00000565056ENST00000566375ENST00000566911ENST00000566915ENST00000615823ENSG00000103546ENST00000219833ENST00000379906ENST00000414754ENST00000561820ENST00000566163ENST00000567238ENST00000568529ENST00000568655ENST00000568943ENST00000574918ENSG00000256812ENST00000457326ENSG00000278928ENST00000624017CIL_0005R5_0002ENSMUSG00000033192ENSMUST00000046290ENSMUST00000130471ENSMUST00000151106ENSMUSG00000055368ENSMUST00000072939ENSMUST00000165470ENSMUSG00000078144ENSMUST00000104947
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005R5_0001ENSG00000087253ENST00000262134ENST00000562299ENST00000563095ENST00000564084ENST00000566915ENST00000615823ENSG00000103546ENST00000219833ENST00000379906ENST00000414754ENST00000566163ENST00000567238ENST00000568655ENST00000574918ENSG00000256812ENST00000457326ENSG00000278928ENST00000624017CIL_0005R5_0002ENSMUSG00000033192ENSMUST00000046290ENSMUST00000130471ENSMUSG00000055368ENSMUST00000072939ENSMUST00000165470ENSMUSG00000078144ENSMUST00000104947
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000087253 ENST00000262134 5.580±0.00 1.973±0.00 1.080±0.00 2.624±1.13 2.082±0.05 2.664±2.44 0.530±0.20 4.223±0.00 0.488±0.15 1.281±0.89 0.880±0.00 2.175±1.98 2.479±0.64 2.635±2.15
ENST00000562299 N/A N/A N/A N/A N/A N/A N/A 0.754±0.00 N/A N/A N/A N/A N/A N/A
ENST00000563095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.693±0.00 N/A N/A
ENST00000564084 N/A N/A N/A N/A N/A N/A N/A 1.019±0.00 N/A N/A N/A 0.641±0.00 N/A 0.976±0.00
ENST00000565056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566915 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.434±0.00 N/A N/A N/A N/A
ENST00000615823 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.442±0.00 N/A N/A N/A N/A
ENSG00000103546 ENST00000219833 N/A N/A N/A N/A N/A N/A N/A 0.050±0.00 N/A N/A N/A N/A 2.985±0.00 N/A
ENST00000379906 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.559±1.75 0.671±0.00
ENST00000414754 N/A N/A 0.067±0.00 N/A N/A N/A 0.010±0.00 N/A 0.079±0.00 N/A N/A 0.016±0.00 N/A N/A
ENST00000561820 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566163 N/A 0.056±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.017±0.00 N/A N/A
ENST00000567238 N/A 0.019±0.00 0.051±0.00 0.024±0.00 0.348±0.00 N/A N/A N/A 0.063±0.00 N/A N/A 0.092±0.00 N/A 1.772±0.38
ENST00000568529 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568655 N/A N/A N/A N/A N/A 0.262±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568943 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574918 0.280±0.00 0.174±0.00 N/A N/A 0.261±0.00 0.066±0.00 0.037±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000256812 ENST00000457326 0.041±0.00 0.057±0.00 0.112±0.00 0.247±0.16 0.066±0.02 0.381±0.30 0.039±0.00 0.231±0.00 1.819±0.00 0.230±0.16 N/A 1.838±2.18 0.181±0.11 0.084±0.06
ENSG00000278928 ENST00000624017 N/A 0.029±0.00 N/A N/A 0.164±0.00 0.038±0.00 N/A N/A N/A N/A N/A 0.065±0.05 2.700±0.00 0.486±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000033192 ENSMUST00000046290 2.393±2.03 2.652±1.02 1.450±0.44 1.034±0.40 2.339±0.91 4.076±2.24 0.354±0.10 0.617±0.13 0.953±0.66 2.477±0.68 0.108±0.05 5.513±2.23 0.532±0.18 0.111±0.04
ENSMUST00000130471 N/A N/A N/A N/A N/A N/A N/A 0.430±0.00 N/A N/A 0.117±0.07 1.676±0.00 N/A N/A
ENSMUST00000151106 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000055368 ENSMUST00000072939 7.740±7.57 1.285±0.00 0.389±0.09 0.252±0.00 0.085±0.02 0.026±0.00 N/A 0.998±0.00 0.004±0.00 8.471±1.98 0.064±0.01 0.685±0.46 10.364±8.09 0.018±0.01
ENSMUST00000165470 N/A N/A N/A N/A 0.178±0.03 0.025±0.01 N/A 0.239±0.09 0.003±0.00 2.025±0.00 N/A 0.349±0.15 18.202±6.51 0.025±0.01
ENSMUSG00000078144 ENSMUST00000104947 0.169±0.18 0.251±0.00 0.585±0.14 0.582±0.32 1.045±0.87 0.196±0.12 0.071±0.00 0.073±0.05 0.066±0.04 3.682±2.57 0.214±0.18 0.342±0.22 0.089±0.02 1.018±0.23

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