C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromosome 17 open reading frame 49
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000258315 C17orf49 9606 + 17:7014495-7017525 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000439424 C17orf49-001 7014782-7017520 protein_coding
  ENST00000546495 C17orf49-006 7014495-7017375 protein_coding
  ENST00000546760 C17orf49-003 7014753-7017506 protein_coding
  ENST00000547709 C17orf49-009 7016165-7017520 processed_transcript
  ENST00000547747 C17orf49-007 7015843-7017521 nonsense_mediated_decay
  ENST00000549857 C17orf49-002 7014754-7017525 retained_intron
  ENST00000550038 C17orf49-008 7015817-7017304 processed_transcript
  ENST00000552402 C17orf49-004 7014769-7017519 protein_coding
  ENST00000552775 C17orf49-005 7015040-7017520 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENST00000439424
Transcript ID Ovary Placenta Testis
ENST00000439424 24.306±0.00 34.305±5.37 17.928±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SP CIL_0006SP_0002 CGP 17:7012417-7017520

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0016568 IEA chromatin modification
GO:0016589 IDA NURF complex
GO:0071339 IDA MLL1 complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015161 zgc:92664 zgc:92664 protein_coding Danio_rerio
ENSDARG00000088755 zgc:103508 zgc:103508 protein_coding Danio_rerio
ENSMUSG00000020831 0610010K14Rik RIKEN cDNA 0610010K14 gene protein_coding Mus_musculus

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