C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromosome 17 open reading frame 49
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000439424 C17orf49-001 ENSG00000258315 9606 + 17:7014782-7017520 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENST00000439424
Transcript ID Ovary Placenta Testis
ENST00000439424 24.306±0.00 34.305±5.37 17.928±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SP CIL_0006SP_0002 CGP 17:7012417-7017520

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0016568 IEA chromatin modification
GO:0016589 IDA NURF complex
GO:0071339 IDA MLL1 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108578 0610010K14Rik-003 protein_coding Mus_musculus 0 990
ENSMUST00000176116 Gm21988-001 nonsense_mediated_decay Mus_musculus 0 972
ENSMUST00000176268 Gm21988-002 nonsense_mediated_decay Mus_musculus 0 939
ENSMUST00000108576 0610010K14Rik-001 protein_coding Mus_musculus 0 763
ENSMUST00000021180 0610010K14Rik-014 nonsense_mediated_decay Mus_musculus 0 632
ENSMUST00000021181 0610010K14Rik-008 protein_coding Mus_musculus 0 616
ENSMUST00000102569 0610010K14Rik-011 protein_coding Mus_musculus 0 588
ENSMUST00000100950 0610010K14Rik-004 protein_coding Mus_musculus 0 514
ENSMUST00000138658 0610010K14Rik-012 processed_transcript Mus_musculus 0 448
ENSMUST00000150504 0610010K14Rik-007 retained_intron Mus_musculus 0 405
ENSMUST00000135390 0610010K14Rik-010 protein_coding Mus_musculus 0 355
ENSMUST00000134700 0610010K14Rik-009 protein_coding Mus_musculus 0 263
ENSMUST00000108577 0610010K14Rik-002 protein_coding Mus_musculus 0 231
ENSMUST00000108579 0610010K14Rik-013 protein_coding Mus_musculus 0 231
ENSMUST00000148878 0610010K14Rik-006 processed_transcript Mus_musculus 0 215
ENSMUST00000108575 0610010K14Rik-005 protein_coding Mus_musculus 0 213

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