C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polycomb group ring finger 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000277258 PCGF2 9606 - 17:38733897-38749817 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000610747 PCGF2-006 38733900-38735596 protein_coding
  ENST00000611883 PCGF2-005 38734280-38746628 protein_coding
  ENST00000616129 PCGF2-001 38735044-38748378 protein_coding
  ENST00000616199 PCGF2-002 38733898-38749817 protein_coding
  ENST00000618506 PCGF2-003 38735112-38748353 protein_coding
  ENST00000618941 PCGF2-004 38735109-38748184 protein_coding
  ENST00000620225 PCGF2-201 38733897-38748305 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000611883ENST00000618506ENST00000618941ENST00000620225
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000611883 N/A N/A 2.514±0.00 1.278±0.00 N/A N/A 0.360±0.00 1.135±0.00 N/A 2.167±0.00 0.544±0.00 1.193±0.00 N/A N/A
ENST00000618506 11.657±0.00 13.414±0.00 N/A N/A N/A 15.637±0.00 N/A 21.955±0.00 N/A 12.470±0.00 0.534±0.00 N/A 11.654±0.00 11.609±0.00
ENST00000618941 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.478±0.00 N/A
ENST00000620225 17.160±0.00 13.711±0.00 N/A 7.590±0.00 6.597±5.61 12.208±0.00 6.390±0.00 16.588±0.00 4.484±0.00 10.823±0.00 3.014±0.00 30.495±17.93 13.034±4.55 10.002±5.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000SG CIL_0000SG_0001 CGP 17:38730235-38749817
CIL_0005QW CIL_0005QW_0001 CGP 17:38733897-38764231

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0001701 IEA in utero embryonic development
GO:0001739 IEA sex chromatin
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0009952 IEA anterior/posterior pattern specification
GO:0016573 IEA histone acetylation
GO:0016604 IEA nuclear body
GO:0031519 IDA PcG protein complex
GO:0035102 IDA PRC1 complex
GO:0046872 IEA metal ion binding
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048706 IEA embryonic skeletal system development
GO:0070301 IEA cellular response to hydrogen peroxide
GO:2001234 IEA negative regulation of apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000018537 Pcgf2 polycomb group ring finger 2 protein_coding Mus_musculus

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