C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polycomb group ring finger 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000620225 PCGF2-201 ENSG00000277258 9606 - 17:38733897-38748305 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000620225
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000620225 17.160±0.00 13.711±0.00 7.590±0.00 6.597±5.61 12.208±0.00 6.390±0.00 16.588±0.00 4.484±0.00 10.823±0.00 3.014±0.00 30.495±17.93 13.034±4.55 10.002±5.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000SG CIL_0000SG_0001 CGP 17:38730235-38749817
CIL_0005QW CIL_0005QW_0001 CGP 17:38733897-38764231

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0031519 IDA PcG protein complex
GO:0035102 IDA PRC1 complex
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103148 Pcgf2-002 protein_coding Mus_musculus 0 1607
ENSMUST00000169807 Pcgf2-201 protein_coding Mus_musculus 0 1447
ENSMUST00000179765 Pcgf2-202 protein_coding Mus_musculus 0 1447
ENSMUST00000018681 Pcgf2-001 protein_coding Mus_musculus 0 1351
ENSMUST00000103149 Pcgf2-005 protein_coding Mus_musculus 0 713
ENSMUST00000134003 Pcgf2-004 processed_transcript Mus_musculus 0 424

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