C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polycomb group ring finger 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000018537 Pcgf2 10090 - 11:97688823-97700497 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000018681 Pcgf2-001 97689820-97700497 protein_coding
  ENSMUST00000103148 Pcgf2-002 97689820-97699641 protein_coding
  ENSMUST00000103149 Pcgf2-005 97689792-97692407 protein_coding
  ENSMUST00000126185 Pcgf2-003 97697199-97699581 processed_transcript
  ENSMUST00000134003 Pcgf2-004 97690528-97692409 processed_transcript
  ENSMUST00000169807 Pcgf2-201 97688823-97699648 protein_coding
  ENSMUST00000179765 Pcgf2-202 97688823-97699384 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018681ENSMUST00000103148ENSMUST00000103149ENSMUST00000134003ENSMUST00000169807ENSMUST00000179765
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018681 N/A 2.602±0.00 N/A N/A 2.050±0.00 3.295±0.68 N/A N/A 0.203±0.00 N/A N/A N/A N/A N/A
ENSMUST00000103148 5.368±2.32 N/A 12.794±1.40 28.907±11.64 4.350±1.97 5.430±0.45 2.460±1.31 6.740±1.52 2.601±1.46 5.521±1.99 0.427±0.12 10.576±6.00 6.499±2.10 1.272±0.52
ENSMUST00000103149 N/A 18.576±3.41 N/A N/A 15.059±4.75 27.032±8.96 N/A 6.805±2.19 1.591±0.56 10.792±4.91 N/A 26.119±9.83 8.418±0.00 1.172±0.00
ENSMUST00000134003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.402±0.00 N/A N/A N/A
ENSMUST00000169807 2.825±1.56 3.170±0.54 7.386±0.45 15.492±4.95 2.952±1.13 5.101±0.78 1.001±0.20 4.066±0.52 1.109±0.89 3.752±1.50 0.304±0.15 6.508±1.72 1.765±0.96 0.613±0.00
ENSMUST00000179765 N/A 2.872±0.00 1.868±0.00 N/A N/A N/A 0.425±0.21 N/A N/A 2.535±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000SG CIL_0000SG_0002 CGP 11:97685826-97700497
CIL_0005QW CIL_0005QW_0002 CGP 11:97688823-97713500

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IEA nuclear chromatin
GO:0001701 IGI in utero embryonic development
GO:0001739 IDA sex chromatin
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0009952 IGI anterior/posterior pattern specification
GO:0016573 IGI histone acetylation
GO:0016604 IDA nuclear body
GO:0031519 IDA PcG protein complex
GO:0035102 ISS PRC1 complex
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0048706 IGI embryonic skeletal system development
GO:0070301 IDA cellular response to hydrogen peroxide
GO:2001234 IGI negative regulation of apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000277258 PCGF2 polycomb group ring finger 2 protein_coding Homo_sapiens

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