C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: T-box 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000000096 Tbx4-201 ENSMUSG00000000094 10090 + 11:85890063-85916097 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastHeartKidneyLiverLungMusclePlacentaTestisENSMUST00000000096
Transcript ID Adipose Bladder Breast Heart Kidney Liver Lung Muscle Placenta Testis
ENSMUST00000000096 0.017±0.00 5.640±1.09 0.303±0.00 0.090±0.08 0.008±0.00 0.054±0.00 9.154±0.00 0.395±0.00 0.802±0.39 0.035±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RJ CIL_0007RJ_0002 VISTA 11:85412703-86014068
CIL_0007JV CIL_0007JV_0002 UCNEbase 11:85613059-86270571
CIL_00096P CIL_00096P_0002 VISTA 11:85867092-86468104
CIL_0000LR CIL_0000LR_0002 CGP 11:85886422-86201193

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IMP angiogenesis
GO:0002009 IMP morphogenesis of an epithelium
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0030324 IMP lung development
GO:0030326 IMP embryonic limb morphogenesis
GO:0035108 IDA:ISS limb morphogenesis
GO:0048705 ISS skeletal system morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000240335 TBX4-002 protein_coding Homo_sapiens 0 2115
ENST00000393853 TBX4-001 protein_coding Homo_sapiens 0 2111
ENST00000586874 TBX4-007 processed_transcript Homo_sapiens 0 542
ENST00000589003 TBX4-003 protein_coding Homo_sapiens 0 736
ENST00000589449 TBX4-006 processed_transcript Homo_sapiens 0 542
ENST00000590174 TBX4-008 retained_intron Homo_sapiens 0 894
ENST00000593249 TBX4-005 processed_transcript Homo_sapiens 0 617

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