C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox B6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173432 Hoxb6-001 ENSMUSG00000000690 10090 + 11:96292476-96301569 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000173432
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000173432 4.997±3.74 51.146±25.55 4.062±0.30 0.707±0.95 3.487±1.71 5.838±2.20 0.046±0.00 16.561±4.95 0.081±0.06 1.832±0.82 0.293±0.15 10.506±5.23 0.248±0.22 0.911±0.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0002 VISTA 11:95992065-96592579
CIL_0000W8 CIL_0000W8_0003 CGP 11:96292476-96306121

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009952 IGI anterior/posterior pattern specification
GO:0034101 IMP erythrocyte homeostasis
GO:0043565 IEA sequence-specific DNA binding
GO:0044822 IEA poly(A) RNA binding
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0048706 IGI embryonic skeletal system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000012470 hoxb4a-001 protein_coding Danio_rerio 0.00000000000005 84
ENSDART00000151584 hoxb4a-002 protein_coding Danio_rerio 0.00000000000005 84
ENST00000222726 HOXA5-001 protein_coding Homo_sapiens 5e-23 113
ENST00000225648 HOXB6-002 protein_coding Homo_sapiens 0 1613
ENST00000239144 HOXB8-001 protein_coding Homo_sapiens 1e-34 152
ENST00000239165 HOXB7-001 protein_coding Homo_sapiens 0 243
ENST00000467314 HOXB7-003 processed_transcript Homo_sapiens 0 243
ENST00000484302 HOXB6-001 protein_coding Homo_sapiens 0 2196
ENST00000490419 HOXB6-004 processed_transcript Homo_sapiens 2e-16 90
ENST00000498634 HOXB8-003 protein_coding Homo_sapiens 1e-28 130
ENST00000520854 HOXA5-002 processed_transcript Homo_sapiens 9e-24 113
ENST00000552000 HOXB3-013 processed_transcript Homo_sapiens 0 405
ENST00000567101 HOXB7-008 processed_transcript Homo_sapiens 0 243
ENST00000576562 HOXB8-002 protein_coding Homo_sapiens 5e-35 152

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