C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein 27 (U4/U6.U5)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000131674 Snrnp27-003 ENSMUSG00000001158 10090 - 6:86675405-86684491 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000131674
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000131674 1.365±0.41 1.948±0.37 45.348±0.00 1.669±0.55 2.000±0.70 1.352±0.22 1.950±0.47 2.201±0.51 1.035±0.00 9.839±25.31 73.188±59.16 69.554±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089T CIL_00089T_0002 VISTA 6:86179085-86780169
CIL_0005JQ CIL_0005JQ_0002 CGP 6:86647044-86684522

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000244227 SNRNP27-001 protein_coding Homo_sapiens 0 660
ENST00000409116 SNRNP27-002 protein_coding Homo_sapiens 0 440
ENST00000429606 SNRNP27-001 processed_pseudogene Homo_sapiens 0 422
ENST00000435990 MXD1-002 protein_coding Homo_sapiens 0 207
ENST00000450162 SNRNP27-003 nonsense_mediated_decay Homo_sapiens 0 647
ENST00000488986 SNRNP27-004 processed_transcript Homo_sapiens 0 241

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