C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein 27 (U4/U6.U5)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001186 Snrnp27-001 ENSMUSG00000001158 10090 - 6:86675221-86684522 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001186
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001186 6.825±0.86 6.396±2.20 26.282±0.01 23.313±4.26 6.153±1.19 8.826±1.55 7.916±1.49 12.170±1.68 15.053±10.13 8.990±0.79 32.715±3.14 12.657±12.68 27.214±7.77 18.074±3.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089T CIL_00089T_0002 VISTA 6:86179085-86780169
CIL_0005JQ CIL_0005JQ_0002 CGP 6:86647044-86684522

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000244227 SNRNP27-001 protein_coding Homo_sapiens 0 715
ENST00000409116 SNRNP27-002 protein_coding Homo_sapiens 0 477
ENST00000429606 SNRNP27-001 processed_pseudogene Homo_sapiens 0 446
ENST00000435990 MXD1-002 protein_coding Homo_sapiens 0 207
ENST00000450162 SNRNP27-003 nonsense_mediated_decay Homo_sapiens 0 684
ENST00000488986 SNRNP27-004 processed_transcript Homo_sapiens 0 241

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