C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein 27 (U4/U6.U5)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113683 Snrnp27-002 ENSMUSG00000001158 10090 - 6:86675672-86684522 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonOvaryENSMUST00000113683
Transcript ID Breast Colon Ovary
ENSMUST00000113683 0.926±0.15 1.529±0.00 0.826±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089T CIL_00089T_0002 VISTA 6:86179085-86780169
CIL_0005JQ CIL_0005JQ_0002 CGP 6:86647044-86684522

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000244227 SNRNP27-001 protein_coding Homo_sapiens 0 558
ENST00000409116 SNRNP27-002 protein_coding Homo_sapiens 0 477
ENST00000429606 SNRNP27-001 processed_pseudogene Homo_sapiens 0 374
ENST00000450162 SNRNP27-003 nonsense_mediated_decay Homo_sapiens 0 558
ENST00000488986 SNRNP27-004 processed_transcript Homo_sapiens 0 257

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