C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syncoilin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001333 Sync 10090 + 4:129287617-129308559 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000102599 Sync-001 129287617-129308559 protein_coding
  ENSMUST00000146448 Sync-002 129287631-129307363 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartMuscleOvaryPlacentaENSMUST00000102599
Transcript ID Colon Heart Muscle Ovary Placenta
ENSMUST00000102599 2.551±0.00 4.891±0.00 8.873±0.00 4.124±0.33 10.488±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002A9 CIL_0002A9_0002 CGP 4:129219578-129308559
CIL_0002A8 CIL_0002A8_0002 CGP 4:129287617-129335370

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0005882 ISS intermediate filament
GO:0030018 IDA Z disc
GO:0031594 IDA neuromuscular junction
GO:0042383 IDA sarcolemma
GO:0045103 IDA intermediate filament-based process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035944 sync syncoilin, intermediate filament protein protein_coding Danio_rerio
ENSG00000162520 SYNC syncoilin, intermediate filament protein protein_coding Homo_sapiens

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