C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0002A8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000035944-ENSDARG00000029058 CGP 7955 19:32236213-32252815
GeneTranscriptPositionBiotype
ENSDARG00000029058 (rbb4)
retinoblastoma binding protein 4
ENSDART00000048144 (rbb4-001) 32245231-32252815 protein_coding
ENSDART00000130326 (rbb4-201) 32243949-32252563 protein_coding
ENSDART00000132807 (rbb4-002) 32245231-32252815 processed_transcript
ENSDARG00000035944 (sync)
syncoilin, intermediate filament protein
ENSDART00000052169 (sync-201) 32238833-32243176 protein_coding
ENSDART00000134645 (sync-001) 32236213-32239558 protein_coding
CIL_0002A8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000001333-ENSMUSG00000057236 CGP 10090 4:129287617-129335370
GeneTranscriptPositionBiotype
ENSMUSG00000001333 (Sync)
syncoilin
ENSMUST00000102599 (Sync-001) 129287617-129308559 protein_coding
ENSMUST00000146448 (Sync-002) 129287631-129307363 retained_intron
ENSMUSG00000057236 (Rbbp4)
retinoblastoma binding protein 4
ENSMUST00000102598 (Rbbp4-001) 129307100-129335370 protein_coding
ENSMUST00000135585 (Rbbp4-002) 129328649-129335083 protein_coding
ENSMUST00000140291 (Rbbp4-004) 129309517-129334644 processed_transcript
ENSMUST00000147183 (Rbbp4-003) 129324824-129335249 retained_intron
ENSMUSG00000096944 (Gm26722)
predicted gene, 26722
ENSMUST00000181237 (Gm26722-201) 129309081-129318443 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002A8_0001ENSDARG00000029058ENSDART00000048144ENSDART00000130326ENSDART00000132807ENSDARG00000035944ENSDART00000052169ENSDART00000134645CIL_0002A8_0002ENSMUSG00000001333ENSMUST00000102599ENSMUST00000146448ENSMUSG00000057236ENSMUST00000102598ENSMUST00000135585ENSMUST00000140291ENSMUST00000147183ENSMUSG00000096944ENSMUST00000181237
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002A8_0001ENSDARG00000029058ENSDART00000048144ENSDART00000130326ENSDARG00000035944ENSDART00000052169CIL_0002A8_0002ENSMUSG00000001333ENSMUST00000102599ENSMUSG00000057236ENSMUST00000102598ENSMUSG00000096944ENSMUST00000181237
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000029058 ENSDART00000048144 N/A N/A N/A 14.187±3.27 N/A N/A 13.292±6.68 40.696±19.65 2.965±0.00 N/A 5.967±0.00 N/A N/A N/A
ENSDART00000130326 N/A N/A N/A 7.557±2.12 N/A N/A 5.143±0.11 16.806±0.00 0.642±0.00 N/A 1.119±0.00 N/A N/A N/A
ENSDART00000132807 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000035944 ENSDART00000052169 N/A N/A N/A 0.300±0.14 N/A N/A 23.595±19.65 6.801±3.77 N/A N/A 3.866±0.00 N/A N/A N/A
ENSDART00000134645 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001333 ENSMUST00000102599 N/A N/A N/A N/A N/A 2.551±0.00 4.891±0.00 N/A N/A N/A 8.873±0.00 4.124±0.33 10.488±0.00 N/A
ENSMUST00000146448 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000057236 ENSMUST00000102598 31.128±9.59 19.134±1.34 32.529±3.57 32.929±19.16 23.672±2.34 19.273±2.26 16.362±1.64 23.842±1.52 28.519±18.26 22.838±1.11 10.568±0.51 25.505±6.05 18.972±10.38 26.453±11.75
ENSMUST00000135585 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000096944 ENSMUST00000181237 N/A N/A N/A 8.391±0.00 N/A N/A N/A N/A N/A N/A 7.756±0.95 15.506±0.18 12.781±3.31 N/A

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