C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002A9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000061804-ENSDARG00000035944 CGP 7955 19:32141804-32243176
GeneTranscriptPositionBiotype
ENSDARG00000035944 (sync)
syncoilin, intermediate filament protein 		ENSDART00000052169 (sync-201) 32238833-32243176 protein_coding
ENSDART00000134645 (sync-001) 32236213-32239558 protein_coding
ENSDARG00000061804 (si:ch211-194e15.5)
si:ch211-194e15.5 		ENSDART00000088573 (si:ch211-194e15.5-201) 32141804-32208780 protein_coding
ENSDART00000137633 (si:ch211-194e15.5-001) 32142653-32149988 protein_coding
CIL_0002A9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000050390-ENSMUSG00000001333 CGP 10090 4:129219578-129308559
GeneTranscriptPositionBiotype
ENSMUSG00000001333 (Sync)
syncoilin 		ENSMUST00000102599 (Sync-001) 129287617-129308559 protein_coding
ENSMUST00000146448 (Sync-002) 129287631-129307363 retained_intron
ENSMUSG00000028811 (Yars)
tyrosyl-tRNA synthetase 		ENSMUST00000106054 (Yars-001) 129189760-129219607 protein_coding
ENSMUST00000128287 (Yars-008) 129189902-129197441 retained_intron
ENSMUST00000133992 (Yars-003) 129197115-129210578 nonsense_mediated_decay
ENSMUST00000137591 (Yars-007) 129212696-129218663 processed_transcript
ENSMUST00000140708 (Yars-004) 129197234-129208615 processed_transcript
ENSMUST00000146106 (Yars-005) 129209538-129210852 retained_intron
ENSMUST00000147248 (Yars-006) 129213762-129214934 retained_intron
ENSMUST00000148619 (Yars-002) 129212244-129215726 retained_intron
ENSMUSG00000050390 (C77080)
expressed sequence C77080 		ENSMUST00000052602 (C77080-005) 129219578-129248443 protein_coding
ENSMUST00000097873 (C77080-001) 129219578-129239174 protein_coding
ENSMUST00000106051 (C77080-002) 129219578-129227911 protein_coding
ENSMUST00000145261 (C77080-004) 129225360-129261404 protein_coding
ENSMUST00000146376 (C77080-003) 129225383-129227480 protein_coding
ENSMUSG00000057236 (Rbbp4)
retinoblastoma binding protein 4 		ENSMUST00000102598 (Rbbp4-001) 129307100-129335370 protein_coding
ENSMUST00000135585 (Rbbp4-002) 129328649-129335083 protein_coding
ENSMUST00000140291 (Rbbp4-004) 129309517-129334644 processed_transcript
ENSMUST00000147183 (Rbbp4-003) 129324824-129335249 retained_intron
ENSMUSG00000087575 (Gm12976)
predicted gene 12976 		ENSMUST00000150171 (Gm12976-001) 129263730-129265010 lincRNA
ENSMUST00000153817 (Gm12976-002) 129261965-129265010 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002A9_0001ENSDARG00000035944ENSDART00000052169ENSDART00000134645ENSDARG00000061804ENSDART00000088573ENSDART00000137633CIL_0002A9_0002ENSMUSG00000001333ENSMUST00000102599ENSMUST00000146448ENSMUSG00000028811ENSMUST00000106054ENSMUST00000128287ENSMUST00000133992ENSMUST00000137591ENSMUST00000140708ENSMUST00000146106ENSMUST00000147248ENSMUST00000148619ENSMUSG00000050390ENSMUST00000052602ENSMUST00000097873ENSMUST00000106051ENSMUST00000145261ENSMUST00000146376ENSMUSG00000057236ENSMUST00000102598ENSMUST00000135585ENSMUST00000140291ENSMUST00000147183ENSMUSG00000087575ENSMUST00000150171ENSMUST00000153817
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002A9_0001ENSDARG00000035944ENSDART00000052169ENSDARG00000061804ENSDART00000088573ENSDART00000137633CIL_0002A9_0002ENSMUSG00000001333ENSMUST00000102599ENSMUSG00000028811ENSMUST00000106054ENSMUST00000137591ENSMUST00000148619ENSMUSG00000050390ENSMUST00000052602ENSMUST00000097873ENSMUST00000106051ENSMUSG00000057236ENSMUST00000102598ENSMUSG00000087575ENSMUST00000150171ENSMUST00000153817
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000035944 ENSDART00000052169 N/A N/A N/A 0.300±0.14 N/A N/A 23.595±19.65 6.801±3.77 N/A N/A 3.866±0.00 N/A N/A N/A
ENSDART00000134645 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000061804 ENSDART00000088573 N/A N/A N/A 3.370±1.23 N/A N/A 0.254±0.11 2.587±0.74 N/A N/A 2.361±0.00 N/A N/A N/A
ENSDART00000137633 N/A N/A N/A 0.582±0.00 N/A N/A 0.222±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001333 ENSMUST00000102599 N/A N/A N/A N/A N/A 2.551±0.00 4.891±0.00 N/A N/A N/A 8.873±0.00 4.124±0.33 10.488±0.00 N/A
ENSMUST00000146448 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000028811 ENSMUST00000106054 10.306±1.43 8.632±1.78 12.366±0.78 25.660±10.18 8.064±2.31 N/A 5.150±0.36 8.877±0.48 21.589±4.97 8.284±0.05 13.434±2.31 12.465±2.54 28.016±8.19 5.610±0.52
ENSMUST00000128287 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137591 N/A N/A N/A 109.235±0.00 N/A N/A N/A N/A N/A N/A N/A 60.729±0.00 87.945±14.45 24.847±0.00
ENSMUST00000140708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146106 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147248 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148619 N/A N/A N/A N/A 1.835±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000050390 ENSMUST00000052602 2.022±0.71 1.421±0.26 10.212±0.68 N/A 2.266±0.37 22.720±3.10 0.881±0.27 4.411±1.23 5.581±1.55 5.638±0.56 N/A 2.665±0.81 8.135±0.74 0.858±0.19
ENSMUST00000097873 2.453±0.00 1.614±0.19 5.258±0.13 2.770±0.85 4.260±0.53 14.235±3.32 N/A 3.615±1.06 1.840±0.00 N/A N/A 3.268±0.70 8.176±3.76 0.619±0.15
ENSMUST00000106051 N/A 3.736±0.00 N/A 3.223±0.24 N/A 30.531±14.81 N/A 2.775±0.33 4.309±1.16 8.186±0.64 N/A 3.982±2.17 N/A N/A
ENSMUST00000145261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000057236 ENSMUST00000102598 31.128±9.59 19.134±1.34 32.529±3.57 32.929±19.16 23.672±2.34 19.273±2.26 16.362±1.64 23.842±1.52 28.519±18.26 22.838±1.11 10.568±0.51 25.505±6.05 18.972±10.38 26.453±11.75
ENSMUST00000135585 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000087575 ENSMUST00000150171 N/A N/A 0.253±0.00 0.653±0.00 N/A N/A N/A N/A 0.203±0.04 N/A 0.676±0.24 0.793±0.00 0.510±0.05 1.436±0.00
ENSMUST00000153817 1.418±0.54 1.124±0.78 1.408±0.19 3.462±0.69 1.381±0.57 0.859±0.28 0.476±0.21 0.719±0.31 1.118±0.54 1.373±0.83 0.298±0.09 3.868±3.80 4.812±4.14 1.413±0.15

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