C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Iroquois related homeobox 2 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001504 Irx2 10090 + 13:72628820-72634198 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000074372 Irx2-001 72628820-72634198 protein_coding
  ENSMUST00000163393 Irx2-006 72632085-72633613 retained_intron
  ENSMUST00000167067 Irx2-005 72629825-72630880 protein_coding
  ENSMUST00000169028 Irx2-003 72628971-72630725 processed_transcript
  ENSMUST00000172353 Irx2-004 72632597-72633770 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074372ENSMUST00000163393ENSMUST00000167067ENSMUST00000169028ENSMUST00000172353
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074372 0.011±0.00 0.057±0.02 0.281±0.15 13.339±4.05 16.404±10.60 0.035±0.03 1.442±0.42 7.617±1.57 0.021±0.01 32.638±8.72 0.072±0.07 0.099±0.04 1.000±0.16 0.499±0.07
ENSMUST00000163393 N/A N/A N/A N/A 3.645±0.00 N/A N/A N/A 0.031±0.02 N/A N/A N/A N/A N/A
ENSMUST00000167067 0.093±0.00 N/A N/A N/A N/A N/A N/A N/A 0.057±0.03 N/A 0.386±0.14 0.189±0.07 N/A N/A
ENSMUST00000169028 0.082±0.00 N/A N/A N/A 20.775±5.22 0.154±0.00 N/A 7.023±0.00 0.190±0.00 N/A N/A 0.354±0.22 N/A N/A
ENSMUST00000172353 N/A N/A N/A N/A 17.156±0.00 N/A N/A N/A 0.039±0.00 N/A 0.144±0.00 0.067±0.00 7.881±3.49 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OW CIL_0007OW_0003 UCNEbase 13:71053181-73117527

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001656 IEP metanephros development
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043565 IEA sequence-specific DNA binding
GO:0072086 IEP specification of loop of Henle identity
GO:0072272 IEP proximal/distal pattern formation involved in metanephric nephron development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000001785 irx2a iroquois homeobox protein 2, a protein_coding Danio_rerio
ENSG00000170561 IRX2 iroquois homeobox 2 protein_coding Homo_sapiens

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