C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Iroquois related homeobox 2 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000074372 Irx2-001 ENSMUSG00000001504 10090 + 13:72628820-72634198 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074372
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074372 0.011±0.00 0.057±0.02 0.281±0.15 13.339±4.05 16.404±10.60 0.035±0.03 1.442±0.42 7.617±1.57 0.021±0.01 32.638±8.72 0.072±0.07 0.099±0.04 1.000±0.16 0.499±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OW CIL_0007OW_0003 UCNEbase 13:71053181-73117527

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001656 IEP metanephros development
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043565 IEA sequence-specific DNA binding
GO:0072086 IEP specification of loop of Henle identity
GO:0072272 IEP proximal/distal pattern formation involved in metanephric nephron development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000231357 IRX4-001 protein_coding Homo_sapiens 0 220
ENST00000302006 IRX1-001 protein_coding Homo_sapiens 0 220
ENST00000302057 IRX2-002 protein_coding Homo_sapiens 0 1875
ENST00000382611 IRX2-001 protein_coding Homo_sapiens 0 2549
ENST00000505790 IRX4-004 protein_coding Homo_sapiens 0 220
ENST00000505938 IRX4-006 processed_transcript Homo_sapiens 0 220
ENST00000508261 IRX4-002 nonsense_mediated_decay Homo_sapiens 0 220
ENST00000513692 IRX4-003 protein_coding Homo_sapiens 0 220
ENST00000613726 IRX4-201 protein_coding Homo_sapiens 0 220
ENST00000622814 IRX4-202 protein_coding Homo_sapiens 0 220

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