C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000002280 Smg9-001 ENSMUSG00000002210 10090 + 7:24399619-24422778 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000002280
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000002280 9.995±1.99 10.273±1.65 10.951±1.13 11.350±4.20 10.679±2.06 10.637±2.05 2.741±0.24 9.457±1.19 7.704±4.60 11.223±0.64 6.485±0.50 12.153±5.12 5.560±2.97 27.401±7.45

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 ISS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0042802 IEA identical protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000270066 SMG9-001 protein_coding Homo_sapiens 0 1940
ENST00000594081 SMG9-012 retained_intron Homo_sapiens 0 268
ENST00000595700 SMG9-003 retained_intron Homo_sapiens 0 1112
ENST00000596714 SMG9-007 protein_coding Homo_sapiens 0 403
ENST00000597586 SMG9-008 protein_coding Homo_sapiens 0 544
ENST00000597598 SMG9-004 nonsense_mediated_decay Homo_sapiens 0 547
ENST00000598860 SMG9-011 retained_intron Homo_sapiens 0 305
ENST00000598886 SMG9-010 retained_intron Homo_sapiens 0 331
ENST00000599804 SMG9-009 protein_coding Homo_sapiens 0 418
ENST00000600097 SMG9-013 retained_intron Homo_sapiens 0 327
ENST00000601170 SMG9-002 protein_coding Homo_sapiens 0 1796
ENST00000601925 SMG9-006 protein_coding Homo_sapiens 0 514
ENST00000602222 SMG9-005 protein_coding Homo_sapiens 0 643

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