C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000148288 Smg9-005 ENSMUSG00000002210 10090 + 7:24414733-24420930 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartOvaryENSMUST00000148288
Transcript ID Adrenal Breast Colon Heart Ovary
ENSMUST00000148288 9.946±1.50 8.146±0.00 9.785±0.56 2.215±0.38 5.441±1.02

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000270066 SMG9-001 protein_coding Homo_sapiens 0 736
ENST00000594081 SMG9-012 retained_intron Homo_sapiens 0 268
ENST00000595700 SMG9-003 retained_intron Homo_sapiens 0 250
ENST00000597598 SMG9-004 nonsense_mediated_decay Homo_sapiens 0 259
ENST00000598860 SMG9-011 retained_intron Homo_sapiens 0 305
ENST00000601170 SMG9-002 protein_coding Homo_sapiens 0 736

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