C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CCR4-NOT transcription complex, subunit 11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000003135 Cnot11 10090 + 1:39534992-39546881 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000003219 Cnot11-201 39535802-39546873 protein_coding
  ENSMUST00000160145 Cnot11-002 39538245-39546483 processed_transcript
  ENSMUST00000161515 Cnot11-001 39534992-39546881 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003219ENSMUST00000160145ENSMUST00000161515
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003219 7.060±2.51 18.154±3.05 8.501±0.29 7.520±3.40 10.352±3.71 8.734±2.85 3.976±0.15 7.938±1.42 4.454±1.22 8.088±1.91 7.474±0.48 12.255±5.83 5.110±0.94 3.789±1.54
ENSMUST00000160145 N/A N/A N/A N/A 4.166±0.00 N/A N/A N/A N/A N/A 1.000±0.00 3.393±0.28 2.519±1.30 N/A
ENSMUST00000161515 1.842±0.66 5.649±1.18 1.180±0.23 2.934±0.71 5.345±1.00 3.092±0.86 1.190±0.26 3.087±0.97 1.771±0.50 1.679±0.09 N/A 6.983±2.58 1.038±0.00 1.612±0.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TG CIL_0008TG_0002 VISTA 1:39141367-39744845
CIL_0004HG CIL_0004HG_0002 CGP 1:39371499-39546881
CIL_0004HD CIL_0004HD_0002 CGP 1:39534992-39577405

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006417 IEA regulation of translation
GO:0008150 ND biological_process
GO:0030014 ISS CCR4-NOT complex
GO:0031047 IEA gene silencing by RNA

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068596 cnot11 CCR4-NOT transcription complex, subunit 11 protein_coding Danio_rerio
ENSG00000158435 CNOT11 CCR4-NOT transcription complex, subunit 11 protein_coding Homo_sapiens

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