C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCR4-NOT transcription complex, subunit 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161515 Cnot11-001 ENSMUSG00000003135 10090 + 1:39534992-39546881 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000161515
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000161515 1.842±0.66 5.649±1.18 1.180±0.23 2.934±0.71 5.345±1.00 3.092±0.86 1.190±0.26 3.087±0.97 1.771±0.50 1.679±0.09 6.983±2.58 1.038±0.00 1.612±0.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TG CIL_0008TG_0002 VISTA 1:39141367-39744845
CIL_0004HG CIL_0004HG_0002 CGP 1:39371499-39546881
CIL_0004HD CIL_0004HD_0002 CGP 1:39534992-39577405

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006417 IEA regulation of translation
GO:0008150 ND biological_process
GO:0030014 ISS CCR4-NOT complex
GO:0031047 IEA gene silencing by RNA

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000099276 cnot11-001 protein_coding Danio_rerio 0 671
ENSDART00000149004 cnot11-002 protein_coding Danio_rerio 0 228
ENST00000289382 CNOT11-001 protein_coding Homo_sapiens 0 2128
ENST00000420107 CNOT11-003 protein_coding Homo_sapiens 0 512
ENST00000462489 CNOT11-002 retained_intron Homo_sapiens 0 531

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