C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCR4-NOT transcription complex, subunit 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000003219 Cnot11-201 ENSMUSG00000003135 10090 + 1:39535802-39546873 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003219
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003219 7.060±2.51 18.154±3.05 8.501±0.29 7.520±3.40 10.352±3.71 8.734±2.85 3.976±0.15 7.938±1.42 4.454±1.22 8.088±1.91 7.474±0.48 12.255±5.83 5.110±0.94 3.789±1.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TG CIL_0008TG_0002 VISTA 1:39141367-39744845
CIL_0004HG CIL_0004HG_0002 CGP 1:39371499-39546881
CIL_0004HD CIL_0004HD_0002 CGP 1:39534992-39577405

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006417 IEA regulation of translation
GO:0008150 ND biological_process
GO:0030014 ISS CCR4-NOT complex
GO:0031047 IEA gene silencing by RNA

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000099276 cnot11-001 protein_coding Danio_rerio 0 671
ENSDART00000149004 cnot11-002 protein_coding Danio_rerio 0 228
ENST00000289382 CNOT11-001 protein_coding Homo_sapiens 0 2056
ENST00000420107 CNOT11-003 protein_coding Homo_sapiens 0 512
ENST00000462489 CNOT11-002 retained_intron Homo_sapiens 0 531

Loading