C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159423 Ddx23-003 ENSMUSG00000003360 10090 - 15:98648003-98662881 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastENSMUST00000159423
Transcript ID Breast
ENSMUST00000159423 2.591±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DO CIL_0003DO_0003 CGP 15:98632220-98662889
CIL_00000F CIL_00000F_0002 CGP 15:98645134-98677461

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000308025 DDX23-001 protein_coding Homo_sapiens 0 1055
ENST00000547135 DDX23-003 nonsense_mediated_decay Homo_sapiens 0 457
ENST00000547165 DDX23-009 retained_intron Homo_sapiens 0 699
ENST00000547290 DDX23-013 retained_intron Homo_sapiens 0 597
ENST00000550834 DDX23-019 protein_coding Homo_sapiens 0 536
ENST00000551098 DDX23-007 retained_intron Homo_sapiens 0 549
ENST00000551189 DDX23-010 retained_intron Homo_sapiens 0 418
ENST00000551468 DDX23-005 protein_coding Homo_sapiens 0 486
ENST00000552069 DDX23-011 retained_intron Homo_sapiens 0 444
ENST00000552369 DDX23-006 processed_transcript Homo_sapiens 0 555
ENST00000552512 DDX23-004 protein_coding Homo_sapiens 0 488
ENST00000552545 RP11-641A6.5-001 processed_pseudogene Homo_sapiens 0 809
ENST00000552555 DDX23-018 processed_transcript Homo_sapiens 0 390
ENST00000552802 DDX23-012 nonsense_mediated_decay Homo_sapiens 0 599
ENST00000553065 DDX23-014 retained_intron Homo_sapiens 0 342
ENST00000553182 DDX23-008 processed_transcript Homo_sapiens 0 555

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