C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000003450 Ddx23-001 ENSMUSG00000003360 10090 - 15:98645134-98662889 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003450
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003450 14.423±2.43 12.084±2.74 12.386±0.53 26.233±17.99 7.407±1.67 14.501±2.10 7.498±0.56 11.666±1.84 12.223±6.49 14.989±1.29 20.373±3.29 18.817±13.28 21.660±12.10 9.445±4.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DO CIL_0003DO_0003 CGP 15:98632220-98662889
CIL_00000F CIL_00000F_0002 CGP 15:98645134-98677461

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005682 IEA U5 snRNP
GO:0005739 IEA mitochondrion
GO:0005886 IEA plasma membrane
GO:0006200 IEA ATP catabolic process
GO:0008026 IEA ATP-dependent helicase activity
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000308025 DDX23-001 protein_coding Homo_sapiens 0 3395
ENST00000547135 DDX23-003 nonsense_mediated_decay Homo_sapiens 0 604
ENST00000547165 DDX23-009 retained_intron Homo_sapiens 0 837
ENST00000547290 DDX23-013 retained_intron Homo_sapiens 0 702
ENST00000547842 DDX23-017 retained_intron Homo_sapiens 0 202
ENST00000549795 DDX23-015 retained_intron Homo_sapiens 0 460
ENST00000550834 DDX23-019 protein_coding Homo_sapiens 0 547
ENST00000551098 DDX23-007 retained_intron Homo_sapiens 0 809
ENST00000551189 DDX23-010 retained_intron Homo_sapiens 0 418
ENST00000551331 DDX23-016 retained_intron Homo_sapiens 0 507
ENST00000551468 DDX23-005 protein_coding Homo_sapiens 0 486
ENST00000552069 DDX23-011 retained_intron Homo_sapiens 0 444
ENST00000552369 DDX23-006 processed_transcript Homo_sapiens 0 636
ENST00000552512 DDX23-004 protein_coding Homo_sapiens 0 662
ENST00000552545 RP11-641A6.5-001 processed_pseudogene Homo_sapiens 0 2636
ENST00000552555 DDX23-018 processed_transcript Homo_sapiens 0 390
ENST00000552802 DDX23-012 nonsense_mediated_decay Homo_sapiens 0 841
ENST00000553065 DDX23-014 retained_intron Homo_sapiens 0 420
ENST00000553182 DDX23-008 processed_transcript Homo_sapiens 0 815

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