C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Fanconi anemia, complementation group L
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109509 Fancl-003 ENSMUSG00000004018 10090 + 11:26387202-26471421 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109509
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109509 2.250±0.80 1.553±0.26 3.568±0.15 2.873±1.20 1.263±0.29 1.467±0.20 1.174±0.42 1.688±0.21 4.519±3.57 1.853±0.21 1.017±0.10 2.975±1.60 4.306±1.64 5.300±1.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LM CIL_0007LM_0002 UCNEbase 11:24062983-26981636
CIL_0007Z0 CIL_0007Z0_0002 VISTA 11:25799721-26400689
CIL_0009DC CIL_0009DC_0002 VISTA 11:25820371-26422138
CIL_0009CV CIL_0009CV_0002 VISTA 11:25863483-26464974
CIL_0007WS CIL_0007WS_0002 VISTA 11:26189088-26791733
CIL_0004OQ CIL_0004OQ_0002 CGP 11:26386135-26593999

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005635 IPI nuclear envelope
GO:0005737 IEA cytoplasm
GO:0006281 ISS DNA repair
GO:0006513 ISS protein monoubiquitination
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0007276 IMP gamete generation
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0042127 IMP regulation of cell proliferation
GO:0043240 ISS Fanconi anaemia nuclear complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000233741 FANCL-001 protein_coding Homo_sapiens 0 974
ENST00000402135 FANCL-002 protein_coding Homo_sapiens 0 917
ENST00000403295 FANCL-004 protein_coding Homo_sapiens 0 300
ENST00000403676 FANCL-006 protein_coding Homo_sapiens 0 682
ENST00000446381 FANCL-007 protein_coding Homo_sapiens 0 322
ENST00000449070 FANCL-003 protein_coding Homo_sapiens 0 667
ENST00000470506 FANCL-010 retained_intron Homo_sapiens 8e-18 95

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