C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004OQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000007885-ENSDARG00000021547 CGP 7955 13:26927787-27023134
GeneTranscriptPositionBiotype
ENSDARG00000007885 (fancl)
Fanconi anemia, complementation group L 		ENSDART00000020946 (fancl-001) 26927812-27004687 protein_coding
ENSDART00000131283 (fancl-003) 26928163-26996256 processed_transcript
ENSDART00000142483 (fancl-002) 26927787-26933289 processed_transcript
ENSDARG00000021547 (vrk2)
vaccinia related kinase 2 		ENSDART00000036419 (vrk2-001) 27003894-27023134 protein_coding
ENSDART00000101441 (vrk2-201) 27003895-27023076 protein_coding
ENSDART00000139264 (vrk2-002) 27021286-27023063 retained_intron
ENSDART00000145407 (vrk2-003) 27004458-27009974 retained_intron

Danio rerio Ensembl (Zv9)

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CIL_0004OQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000004018-ENSMUSG00000064090 CGP 10090 11:26386135-26593999
GeneTranscriptPositionBiotype
ENSMUSG00000004018 (Fancl)
Fanconi anemia, complementation group L 		ENSMUST00000004120 (Fancl-001) 26386135-26471876 protein_coding
ENSMUST00000109509 (Fancl-003) 26387202-26471421 protein_coding
ENSMUST00000134445 (Fancl-005) 26468335-26471430 protein_coding
ENSMUST00000136830 (Fancl-004) 26387202-26422460 protein_coding
ENSMUST00000143471 (Fancl-002) 26387202-26469124 processed_transcript
ENSMUSG00000064090 (Vrk2)
vaccinia related kinase 2 		ENSMUST00000078362 (Vrk2-201) 26471404-26593920 protein_coding
ENSMUST00000109504 (Vrk2-001) 26471322-26591729 protein_coding
ENSMUST00000124294 (Vrk2-003) 26533841-26593622 retained_intron
ENSMUST00000125545 (Vrk2-005) 26583296-26593603 processed_transcript
ENSMUST00000133487 (Vrk2-006) 26534257-26549365 processed_transcript
ENSMUST00000155728 (Vrk2-002) 26545395-26593923 retained_intron
ENSMUST00000156264 (Vrk2-004) 26547848-26593999 protein_coding
ENSMUSG00000068314 (Gm6899)
predicted gene 6899 		ENSMUST00000089614 (Gm6899-201) 26593241-26593862 protein_coding
ENSMUSG00000081811 (Gm12713)
predicted gene 12713 		ENSMUST00000118404 (Gm12713-001) 26409207-26410501 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004OQ_0001ENSDARG00000007885ENSDART00000020946ENSDART00000131283ENSDART00000142483ENSDARG00000021547ENSDART00000036419ENSDART00000101441ENSDART00000139264ENSDART00000145407CIL_0004OQ_0002ENSMUSG00000004018ENSMUST00000004120ENSMUST00000109509ENSMUST00000134445ENSMUST00000136830ENSMUST00000143471ENSMUSG00000064090ENSMUST00000078362ENSMUST00000109504ENSMUST00000124294ENSMUST00000125545ENSMUST00000133487ENSMUST00000155728ENSMUST00000156264ENSMUSG00000068314ENSMUST00000089614ENSMUSG00000081811ENSMUST00000118404
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004OQ_0001ENSDARG00000007885ENSDART00000020946ENSDART00000142483ENSDARG00000021547ENSDART00000036419ENSDART00000101441ENSDART00000139264ENSDART00000145407CIL_0004OQ_0002ENSMUSG00000004018ENSMUST00000004120ENSMUST00000109509ENSMUST00000134445ENSMUST00000136830ENSMUST00000143471ENSMUSG00000064090ENSMUST00000078362ENSMUST00000109504ENSMUST00000155728ENSMUST00000156264ENSMUSG00000068314ENSMUST00000089614ENSMUSG00000081811ENSMUST00000118404
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000007885 ENSDART00000020946 N/A N/A N/A 0.326±0.00 N/A N/A N/A 1.087±0.00 N/A N/A 0.171±0.00 N/A N/A N/A
ENSDART00000131283 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000142483 N/A N/A N/A N/A N/A N/A N/A N/A 0.269±0.00 N/A N/A N/A N/A N/A
ENSDARG00000021547 ENSDART00000036419 N/A N/A N/A N/A N/A N/A 1.423±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000101441 N/A N/A N/A 1.933±0.65 N/A N/A 2.185±1.10 3.702±0.00 0.061±0.00 N/A 0.554±0.00 N/A N/A N/A
ENSDART00000139264 N/A N/A N/A N/A N/A N/A 1.203±0.00 0.844±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000145407 N/A N/A N/A N/A N/A N/A 4.573±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004018 ENSMUST00000004120 N/A N/A 1.220±0.08 0.554±0.39 0.475±0.00 N/A N/A N/A 1.938±0.76 N/A 0.294±0.10 0.657±0.24 0.907±0.00 N/A
ENSMUST00000109509 2.250±0.80 1.553±0.26 3.568±0.15 2.873±1.20 1.263±0.29 1.467±0.20 1.174±0.42 1.688±0.21 4.519±3.57 1.853±0.21 1.017±0.10 2.975±1.60 4.306±1.64 5.300±1.79
ENSMUST00000134445 N/A N/A N/A 2.055±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 4.717±0.00 N/A
ENSMUST00000136830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.274±0.00 N/A N/A
ENSMUST00000143471 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.574±0.00 N/A N/A
ENSMUSG00000064090 ENSMUST00000078362 1.449±0.47 N/A 2.941±0.08 N/A 1.176±0.44 N/A 1.086±0.26 1.181±0.39 3.132±2.64 0.823±0.08 0.906±0.54 1.423±1.27 2.971±0.31 2.911±0.86
ENSMUST00000109504 1.053±0.00 N/A 3.095±0.47 1.100±0.48 2.198±0.00 1.338±0.18 N/A 0.971±0.38 3.202±2.69 1.234±0.36 1.337±0.52 2.394±2.30 3.912±1.64 3.284±0.92
ENSMUST00000124294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133487 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155728 N/A N/A N/A N/A 0.401±0.02 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.257±0.00
ENSMUSG00000068314 ENSMUST00000089614 N/A 3.058±0.73 N/A N/A 2.391±0.70 N/A N/A N/A N/A 1.390±0.00 N/A 2.063±0.85 N/A N/A
ENSMUSG00000081811 ENSMUST00000118404 0.056±0.00 0.135±0.00 0.055±0.00 0.105±0.04 0.121±0.00 0.128±0.00 N/A N/A 0.069±0.03 0.129±0.07 N/A 0.186±0.10 0.035±0.02 0.093±0.00

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