C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane emp24 protein transport domain containing 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004394 Tmed4 10090 - 11:6270369-6274870 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000004508 Tmed4-001 6270369-6274870 protein_coding
  ENSMUST00000130621 Tmed4-003 6271661-6274870 retained_intron
  ENSMUST00000132147 Tmed4-002 6273741-6274865 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004508ENSMUST00000130621ENSMUST00000132147
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004508 44.684±3.66 25.955±2.51 13.445±1.54 33.657±18.45 31.758±11.97 35.911±3.67 47.661±6.66 81.157±5.24 27.126±12.85 53.433±2.68 16.065±5.92 43.278±10.88 13.127±6.30 39.552±17.06
ENSMUST00000130621 9.910±0.00 N/A 10.874±0.00 26.394±15.08 9.820±0.97 7.760±0.20 N/A N/A N/A N/A N/A 20.886±0.00 8.948±2.22 N/A
ENSMUST00000132147 N/A N/A N/A N/A N/A N/A N/A N/A 14.961±0.00 N/A N/A N/A N/A 8.086±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000J4 CIL_0000J4_0002 CGP 11:6258919-6274870
CIL_0000J7 CIL_0000J7_0002 CGP 11:6270369-6356642

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004871 IEA signal transducer activity
GO:0005783 IEA endoplasmic reticulum
GO:0006810 IEA transport
GO:0007165 IEA signal transduction
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane
GO:0043123 IEA positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024954 tmed4 transmembrane emp24 protein transport domain containing 4 protein_coding Danio_rerio
ENSG00000158604 TMED4 transmembrane emp24 protein transport domain containing 4 protein_coding Homo_sapiens

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