C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000J4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000136271-ENSG00000158604 CGP 9606 7:44565417-44582287
GeneTranscriptPositionBiotype
ENSG00000136271 (DDX56)
DEAD (Asp-Glu-Ala-Asp) box helicase 56 		ENST00000258772 (DDX56-001) 44565417-44574002 protein_coding
ENST00000415758 (DDX56-004) 44568216-44573908 nonsense_mediated_decay
ENST00000421223 (DDX56-002) 44565805-44575051 nonsense_mediated_decay
ENST00000431640 (DDX56-003) 44566002-44573925 protein_coding
ENST00000433257 (DDX56-008) 44565837-44573664 nonsense_mediated_decay
ENST00000446987 (DDX56-007) 44565804-44573895 nonsense_mediated_decay
ENST00000448192 (DDX56-011) 44566138-44569842 protein_coding
ENST00000467318 (DDX56-006) 44565837-44573664 processed_transcript
ENST00000473924 (DDX56-010) 44569752-44570765 retained_intron
ENST00000479440 (DDX56-009) 44572650-44573925 retained_intron
ENST00000479602 (DDX56-012) 44565807-44567782 processed_transcript
ENST00000485367 (DDX56-005) 44565819-44573758 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_0000J4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000004393-ENSMUSG00000004394 CGP 10090 11:6258919-6274870
GeneTranscriptPositionBiotype
ENSMUSG00000004393 (Ddx56)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 		ENSMUST00000004507 (Ddx56-001) 6258919-6267772 protein_coding
ENSMUST00000139073 (Ddx56-004) 6265307-6266392 retained_intron
ENSMUST00000151446 (Ddx56-002) 6265637-6267772 protein_coding
ENSMUST00000155874 (Ddx56-003) 6267046-6267746 retained_intron
ENSMUSG00000004394 (Tmed4)
transmembrane emp24 protein transport domain containing 4 		ENSMUST00000004508 (Tmed4-001) 6270369-6274870 protein_coding
ENSMUST00000130621 (Tmed4-003) 6271661-6274870 retained_intron
ENSMUST00000132147 (Tmed4-002) 6273741-6274865 protein_coding
ENSMUSG00000077524 (n-R5s67)
nuclear encoded rRNA 5S 67 		ENSMUST00000104336 (n-R5s67-201) 6273311-6273424 rRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000J4_0001ENSG00000136271ENST00000258772ENST00000415758ENST00000421223ENST00000431640ENST00000433257ENST00000446987ENST00000448192ENST00000467318ENST00000473924ENST00000479440ENST00000479602ENST00000485367CIL_0000J4_0002ENSMUSG00000004393ENSMUST00000004507ENSMUST00000139073ENSMUST00000151446ENSMUST00000155874ENSMUSG00000004394ENSMUST00000004508ENSMUST00000130621ENSMUST00000132147ENSMUSG00000077524ENSMUST00000104336
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000J4_0001ENSG00000136271ENST00000258772ENST00000421223ENST00000431640ENST00000446987ENST00000467318ENST00000479602ENST00000485367CIL_0000J4_0002ENSMUSG00000004393ENSMUST00000004507ENSMUSG00000004394ENSMUST00000004508ENSMUST00000130621ENSMUST00000132147ENSMUSG00000077524ENSMUST00000104336
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136271 ENST00000258772 N/A N/A N/A N/A 1.528±0.42 0.887±0.00 0.246±0.00 5.425±0.00 N/A N/A N/A 9.934±2.29 2.548±0.00 3.435±0.00
ENST00000415758 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421223 N/A N/A N/A N/A 1.128±0.42 1.190±0.00 N/A 0.692±0.00 N/A N/A N/A N/A N/A 2.922±0.86
ENST00000431640 N/A 9.542±0.00 4.049±0.00 4.751±0.26 4.517±0.65 3.946±1.03 1.121±0.00 4.482±0.00 2.386±0.00 N/A N/A 11.830±7.28 6.958±0.00 7.702±2.42
ENST00000433257 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446987 8.947±0.00 12.433±0.00 0.667±0.00 7.362±2.54 4.384±0.00 2.336±1.43 2.378±0.00 7.659±0.00 3.606±0.96 3.782±0.00 N/A 8.556±4.61 6.525±0.75 5.065±0.00
ENST00000448192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467318 N/A N/A N/A N/A 1.197±0.00 N/A N/A N/A 8.065±0.00 N/A 5.069±0.54 2.437±0.00 N/A N/A
ENST00000473924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479602 N/A N/A N/A N/A N/A N/A N/A N/A 19.580±0.00 N/A N/A N/A N/A N/A
ENST00000485367 4.308±0.00 8.644±0.00 N/A 2.435±0.00 4.074±0.00 1.842±0.89 3.732±3.48 14.165±0.00 6.643±0.00 7.648±4.26 15.003±0.00 12.660±9.40 14.803±9.46 6.824±3.34
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004393 ENSMUST00000004507 18.852±0.21 14.693±0.83 14.532±2.88 17.149±6.24 13.224±1.66 7.976±1.24 7.445±1.50 12.868±0.96 17.216±8.58 10.414±1.51 9.077±0.72 13.616±2.96 18.937±10.32 11.927±5.05
ENSMUST00000139073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000004394 ENSMUST00000004508 44.684±3.66 25.955±2.51 13.445±1.54 33.657±18.45 31.758±11.97 35.911±3.67 47.661±6.66 81.157±5.24 27.126±12.85 53.433±2.68 16.065±5.92 43.278±10.88 13.127±6.30 39.552±17.06
ENSMUST00000130621 9.910±0.00 N/A 10.874±0.00 26.394±15.08 9.820±0.97 7.760±0.20 N/A N/A N/A N/A N/A 20.886±0.00 8.948±2.22 N/A
ENSMUST00000132147 N/A N/A N/A N/A N/A N/A N/A N/A 14.961±0.00 N/A N/A N/A N/A 8.086±0.00
ENSMUSG00000077524 ENSMUST00000104336 N/A N/A 46.524±0.00 12.163±0.30 4588.770±0.00 N/A N/A N/A 17.255±0.00 N/A N/A N/A 25.188±0.00 14.916±0.00

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