C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein phosphatase 1, catalytic subunit, gamma isoform
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004455 Ppp1cc 10090 + 5:122158278-122175273 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000086294 Ppp1cc-002 122158356-122175273 protein_coding
  ENSMUST00000102528 Ppp1cc-001 122158278-122175273 protein_coding
  ENSMUST00000128309 Ppp1cc-009 122158356-122175269 retained_intron
  ENSMUST00000132555 Ppp1cc-005 122158356-122175273 retained_intron
  ENSMUST00000134719 Ppp1cc-008 122172732-122174675 processed_transcript
  ENSMUST00000135090 Ppp1cc-004 122168205-122169734 retained_intron
  ENSMUST00000142562 Ppp1cc-007 122171649-122172860 retained_intron
  ENSMUST00000143218 Ppp1cc-003 122158957-122168969 processed_transcript
  ENSMUST00000151184 Ppp1cc-006 122171924-122175265 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000086294ENSMUST00000102528ENSMUST00000128309ENSMUST00000132555ENSMUST00000134719ENSMUST00000142562
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000086294 N/A 28.901±0.70 N/A 27.513±0.00 N/A N/A N/A N/A N/A N/A 10.453±0.43 40.572±0.00 32.441±19.69 237.128±41.99
ENSMUST00000102528 23.432±7.56 16.287±9.75 47.572±5.00 57.506±26.92 23.973±6.72 26.976±3.86 19.781±3.54 32.592±5.62 36.059±23.20 26.574±4.75 32.647±5.25 30.497±14.48 26.544±17.93 42.751±6.56
ENSMUST00000128309 11.842±5.29 9.954±2.06 15.603±1.91 20.229±0.00 10.455±1.91 11.107±3.29 4.598±0.56 6.011±0.65 9.021±4.37 12.822±0.37 N/A 18.487±3.55 7.110±2.85 N/A
ENSMUST00000132555 N/A 8.253±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134719 N/A N/A N/A N/A 27.183±0.00 N/A N/A N/A N/A N/A N/A 76.410±8.42 24.947±11.32 N/A
ENSMUST00000142562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 89.631±41.66 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TJ CIL_0008TJ_0002 VISTA 5:121625608-122227679
CIL_000903 CIL_000903_0002 VISTA 5:121732502-122333355
CIL_0008YU CIL_0008YU_0002 VISTA 5:121792218-122394768

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000776 IEA kinetochore
GO:0004722 IEA protein serine/threonine phosphatase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005925 IEA focal adhesion
GO:0005977 IEA glycogen metabolic process
GO:0006470 IDA protein dephosphorylation
GO:0007049 IEA cell cycle
GO:0016791 IDA phosphatase activity
GO:0019901 IEA protein kinase binding
GO:0032922 IDA circadian regulation of gene expression
GO:0042752 IMP regulation of circadian rhythm
GO:0043153 IMP entrainment of circadian clock by photoperiod
GO:0043234 IEA protein complex
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0047485 IEA protein N-terminus binding
GO:0051301 IEA cell division
GO:0070688 IEA MLL5-L complex
GO:0072357 ISS PTW/PP1 phosphatase complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090779 ppp1cc protein phosphatase 1, catalytic subunit, gamma isoform protein_coding Danio_rerio
ENSG00000186298 PPP1CC protein phosphatase 1, catalytic subunit, gamma isozyme protein_coding Homo_sapiens

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