C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein phosphatase 1, catalytic subunit, gamma isoform
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000086294 Ppp1cc-002 ENSMUSG00000004455 10090 + 5:122158356-122175273 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainMuscleOvaryPlacentaTestisENSMUST00000086294
Transcript ID Adrenal Brain Muscle Ovary Placenta Testis
ENSMUST00000086294 28.901±0.70 27.513±0.00 10.453±0.43 40.572±0.00 32.441±19.69 237.128±41.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TJ CIL_0008TJ_0002 VISTA 5:121625608-122227679
CIL_000903 CIL_000903_0002 VISTA 5:121732502-122333355
CIL_0008YU CIL_0008YU_0002 VISTA 5:121792218-122394768

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000776 IEA kinetochore
GO:0005515 IPI protein binding
GO:0005977 IEA glycogen metabolic process
GO:0006470 IDA protein dephosphorylation
GO:0007049 IEA cell cycle
GO:0016791 IDA phosphatase activity
GO:0032922 IDA circadian regulation of gene expression
GO:0042752 IMP regulation of circadian rhythm
GO:0043153 IMP entrainment of circadian clock by photoperiod
GO:0046872 IEA metal ion binding
GO:0051301 IEA cell division
GO:0072357 ISS PTW/PP1 phosphatase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000312989 PPP1CA-002 protein_coding Homo_sapiens 0 628
ENST00000335007 PPP1CC-001 protein_coding Homo_sapiens 0 1371
ENST00000340766 PPP1CC-002 protein_coding Homo_sapiens 0 1714
ENST00000358239 PPP1CA-006 protein_coding Homo_sapiens 0 544
ENST00000376745 PPP1CA-001 protein_coding Homo_sapiens 0 641
ENST00000526510 PPP1CA-003 retained_intron Homo_sapiens 0 628
ENST00000527663 PPP1CA-007 protein_coding Homo_sapiens 0 311
ENST00000529724 PPP1CA-005 processed_transcript Homo_sapiens 0 202
ENST00000532279 PPP1CA-008 processed_transcript Homo_sapiens 6e-38 161
ENST00000532446 PPP1CA-004 processed_transcript Homo_sapiens 0 628
ENST00000537694 PPP1CA-009 processed_transcript Homo_sapiens 0 481
ENST00000546904 PPP1CC-008 retained_intron Homo_sapiens 0 255
ENST00000546933 PPP1CC-004 protein_coding Homo_sapiens 0 1234
ENST00000550261 PPP1CC-005 nonsense_mediated_decay Homo_sapiens 0 946
ENST00000550991 PPP1CC-010 protein_coding Homo_sapiens 0 1291
ENST00000551582 PPP1CC-007 protein_coding Homo_sapiens 0 213
ENST00000551676 PPP1CC-009 protein_coding Homo_sapiens 0 1118
ENST00000553024 PPP1CC-006 retained_intron Homo_sapiens 0 821
ENST00000620030 PPP1CC-011 non_stop_decay Homo_sapiens 0 558

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