C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coronin, actin binding protein 1C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004530 Coro1c 10090 - 5:113842436-113908758 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000004646 Coro1c-001 113842436-113908758 protein_coding
  ENSMUST00000111283 Coro1c-010 113848108-113849670 retained_intron
  ENSMUST00000163264 Coro1c-004 113865701-113882945 protein_coding
  ENSMUST00000163995 Coro1c-008 113845243-113850862 retained_intron
  ENSMUST00000164980 Coro1c-002 113842436-113908705 nonsense_mediated_decay
  ENSMUST00000166647 Coro1c-006 113848553-113874648 processed_transcript
  ENSMUST00000168399 Coro1c-005 113865759-113882431 protein_coding
  ENSMUST00000168493 Coro1c-007 113848612-113858774 processed_transcript
  ENSMUST00000168634 Coro1c-009 113845254-113849865 retained_intron
  ENSMUST00000171630 Coro1c-003 113877063-113908645 retained_intron
  ENSMUST00000172016 Coro1c-011 113846189-113847620 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004646ENSMUST00000164980
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004646 37.520±12.26 9.504±2.90 40.474±7.41 34.415±21.80 16.705±2.84 49.928±6.08 9.269±1.90 20.679±1.05 10.097±6.37 53.631±0.58 2.312±0.55 29.444±10.23 39.510±23.67 6.882±0.46
ENSMUST00000164980 N/A 12.134±2.93 N/A N/A 11.187±2.73 27.903±7.06 N/A N/A 2.130±0.43 N/A 0.858±0.00 10.768±4.83 3.549±0.00 0.322±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VQ CIL_0001VQ_0002 CGP 5:113817798-113908758
CIL_0001GO CIL_0001GO_0003 CGP 5:113842436-113993894

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000147 TAS actin cortical patch assembly
GO:0005737 IEA cytoplasm
GO:0005856 TAS cytoskeleton
GO:0005886 IEA plasma membrane
GO:0005925 IEA focal adhesion
GO:0006909 TAS phagocytosis
GO:0015629 IBA actin cytoskeleton
GO:0030036 IBA actin cytoskeleton organization
GO:0042995 IEA cell projection
GO:0051015 IBA actin filament binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021193 coro1cb coronin, actin binding protein, 1Cb protein_coding Danio_rerio
ENSDARG00000035598 coro1ca coronin, actin binding protein, 1Ca protein_coding Danio_rerio
ENSG00000110880 CORO1C coronin, actin binding protein, 1C protein_coding Homo_sapiens

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