C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coronin, actin binding protein, 1C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000110880 CORO1C 9606 - 12:108645109-108731596 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261401 CORO1C-001 108645109-108731596 protein_coding
  ENST00000420959 CORO1C-201 108645115-108702998 protein_coding
  ENST00000421578 CORO1C-009 108647380-108696402 protein_coding
  ENST00000541050 CORO1C-007 108646567-108730843 protein_coding
  ENST00000546571 CORO1C-014 108658881-108730551 protein_coding
  ENST00000546705 CORO1C-020 108646569-108652345 protein_coding
  ENST00000547170 CORO1C-015 108662114-108701924 retained_intron
  ENST00000547294 CORO1C-021 108658823-108701981 protein_coding
  ENST00000547361 CORO1C-018 108652045-108658822 retained_intron
  ENST00000549384 CORO1C-003 108646989-108731518 processed_transcript
  ENST00000549387 CORO1C-019 108648687-108649671 retained_intron
  ENST00000549772 CORO1C-008 108647403-108703075 protein_coding
  ENST00000550032 CORO1C-016 108658859-108701356 protein_coding
  ENST00000550542 CORO1C-002 108647384-108731526 nonsense_mediated_decay
  ENST00000551044 CORO1C-013 108662023-108730669 protein_coding
  ENST00000551059 CORO1C-010 108700940-108731518 retained_intron
  ENST00000551550 CORO1C-012 108658878-108731153 protein_coding
  ENST00000552030 CORO1C-017 108648963-108658832 processed_transcript
  ENST00000552871 CORO1C-011 108657362-108731518 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261401ENST00000420959ENST00000421578ENST00000546705ENST00000549384ENST00000550542ENST00000552030
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261401 21.327±0.00 7.527±0.00 1.024±0.00 18.208±0.00 23.656±21.23 20.213±14.79 7.976±0.00 N/A 6.095±3.17 16.055±9.86 0.481±0.00 20.300±12.10 15.546±4.09 22.564±15.39
ENST00000420959 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.540±0.00 N/A N/A
ENST00000421578 N/A N/A N/A 4.451±0.00 6.412±0.00 5.078±0.00 1.205±0.00 3.040±0.00 N/A 6.057±0.00 N/A 7.310±0.00 N/A N/A
ENST00000546705 N/A N/A N/A N/A 15.832±0.00 N/A N/A 5.730±0.00 N/A N/A N/A N/A N/A N/A
ENST00000549384 N/A N/A N/A N/A N/A 6.247±0.00 N/A N/A N/A N/A 1.231±0.00 N/A N/A N/A
ENST00000550542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.089±0.00 N/A N/A N/A
ENST00000552030 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.276±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VQ CIL_0001VQ_0001 CGP 12:108622277-108731596
CIL_0001GO CIL_0001GO_0002 CGP 12:108645109-108857590

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005925 IDA focal adhesion
GO:0006909 TAS phagocytosis
GO:0007165 TAS signal transduction
GO:0015629 IEA:IBA actin cytoskeleton
GO:0030036 IEA:IBA actin cytoskeleton organization
GO:0042995 IEA cell projection
GO:0051015 IEA:IBA actin filament binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021193 coro1cb coronin, actin binding protein, 1Cb protein_coding Danio_rerio
ENSDARG00000035598 coro1ca coronin, actin binding protein, 1Ca protein_coding Danio_rerio
ENSMUSG00000004530 Coro1c coronin, actin binding protein 1C protein_coding Mus_musculus

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