C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: AT rich interactive domain 3B (BRIGHT-like)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004661 Arid3b 10090 - 9:57790353-57836793 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000004780 Arid3b-201 57790513-57834236 protein_coding
  ENSMUST00000098686 Arid3b-002 57794687-57836793 protein_coding
  ENSMUST00000114165 Arid3b-005 57792423-57836478 nonsense_mediated_decay
  ENSMUST00000164010 Arid3b-006 57790353-57836706 protein_coding
  ENSMUST00000164035 Arid3b-003 57794686-57836761 nonsense_mediated_decay
  ENSMUST00000167670 Arid3b-004 57808130-57836770 retained_intron
  ENSMUST00000169563 Arid3b-008 57790359-57791648 processed_transcript
  ENSMUST00000170477 Arid3b-007 57798150-57820627 protein_coding
  ENSMUST00000171444 Arid3b-001 57790356-57836708 protein_coding
  ENSMUST00000171949 Arid3b-009 57792161-57796221 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004780ENSMUST00000098686ENSMUST00000114165ENSMUST00000164010ENSMUST00000164035ENSMUST00000171444
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004780 0.609±0.01 1.002±0.09 1.431±0.33 1.876±0.95 3.228±0.76 1.575±0.42 0.588±0.07 0.703±0.25 1.442±1.35 2.016±0.70 0.577±0.25 1.060±0.29 8.816±4.01 7.951±3.05
ENSMUST00000098686 0.556±0.00 N/A N/A N/A N/A N/A N/A N/A 0.284±0.00 N/A 0.457±0.00 N/A N/A N/A
ENSMUST00000114165 N/A 1.235±0.38 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164010 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.309±0.00
ENSMUST00000164035 N/A N/A N/A 0.840±0.08 N/A 0.542±0.00 N/A N/A 0.886±0.36 N/A N/A 0.619±0.00 N/A N/A
ENSMUST00000171444 N/A 0.612±0.22 0.305±0.00 1.291±0.15 N/A N/A 0.187±0.00 N/A 1.899±0.33 N/A N/A N/A 2.729±0.00 6.248±0.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UD CIL_0007UD_0002 VISTA 9:57506610-58107834

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001205 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070474 arid3b AT rich interactive domain 3B (Bright like) protein_coding Danio_rerio
ENSG00000179361 ARID3B AT rich interactive domain 3B (BRIGHT-like) protein_coding Homo_sapiens

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