C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 3B (BRIGHT-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000164035 Arid3b-003 ENSMUSG00000004661 10090 - 9:57794686-57836761 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonLiverOvaryENSMUST00000164035
Transcript ID Brain Colon Liver Ovary
ENSMUST00000164035 0.840±0.08 0.542±0.00 0.886±0.36 0.619±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UD CIL_0007UD_0002 VISTA 9:57506610-58107834

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001205 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000103470 arid3b-201 protein_coding Danio_rerio 0 267
ENST00000346246 ARID3B-001 protein_coding Homo_sapiens 0 813
ENST00000448213 RP5-837I24.1-001 processed_pseudogene Homo_sapiens 0 710
ENST00000566147 ARID3B-004 protein_coding Homo_sapiens 0 473
ENST00000566468 ARID3B-005 retained_intron Homo_sapiens 0 272
ENST00000569680 ARID3B-002 retained_intron Homo_sapiens 0 817
ENST00000622429 ARID3B-201 protein_coding Homo_sapiens 0 813

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