C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATP-binding cassette, sub-family A (ABC1), member 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004668 Abca13 10090 + 11:9191942-9684259 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000042740 Abca13-001 9191942-9684259 protein_coding
  ENSMUST00000141233 Abca13-002 9191942-9224540 processed_transcript
  ENSMUST00000151522 Abca13-003 9193451-9256178 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042740ENSMUST00000141233ENSMUST00000151522
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042740 0.002±0.00 0.007±0.00 0.004±0.00 0.006±0.00 0.007±0.00 0.028±0.01 0.005±0.00 2.233±0.95 0.083±0.06 0.018±0.01 0.002±0.00 0.034±0.02 0.005±0.01 0.035±0.01
ENSMUST00000141233 N/A N/A N/A N/A N/A 0.051±0.02 N/A N/A N/A N/A N/A 0.032±0.02 N/A N/A
ENSMUST00000151522 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.125±0.00 N/A 0.164±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000S4 CIL_0000S4_0002 CGP 11:9118103-9684259
CIL_0000S3 CIL_0000S3_0002 CGP 11:9191942-11268931

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component
GO:0006200 IEA ATP catabolic process
GO:0006810 IEA transport
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0016887 IEA ATPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000179869 ABCA13 ATP-binding cassette, sub-family A (ABC1), member 13 protein_coding Homo_sapiens

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