C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000S3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000179869-ENSG00000188730 CGP 9606 7:48171458-49921950
GeneTranscriptPositionBiotype
ENSG00000042813 (ZPBP)
zona pellucida binding protein 		ENST00000046087 (ZPBP-001) 49937441-50093264 protein_coding
ENST00000413331 (ZPBP-004) 50081860-50093232 nonsense_mediated_decay
ENST00000419417 (ZPBP-003) 49937528-50093236 protein_coding
ENST00000450231 (ZPBP-006) 50081774-50121329 protein_coding
ENST00000465922 (ZPBP-002) 49850478-49936161 processed_transcript
ENST00000491129 (ZPBP-005) 49850421-50056424 processed_transcript
ENSG00000179869 (ABCA13)
ATP-binding cassette, sub-family A (ABC1), member 13 		ENST00000411975 (ABCA13-003) 48455063-48647496 protein_coding
ENST00000417403 (ABCA13-002) 48171458-48272995 nonsense_mediated_decay
ENST00000435451 (ABCA13-005) 48507872-48520145 protein_coding
ENST00000435803 (ABCA13-001) 48171460-48647495 protein_coding
ENST00000453246 (ABCA13-004) 48376442-48644718 nonsense_mediated_decay
ENST00000484268 (ABCA13-006) 48313067-48404665 retained_intron
ENST00000544596 (ABCA13-008) 48279276-48646283 protein_coding
ENST00000611776 (ABCA13-007) 48279276-48627092 processed_transcript
ENSG00000188730 (VWC2)
von Willebrand factor C domain containing 2 		ENST00000340652 (VWC2-001) 49773661-49921950 protein_coding
ENSG00000218305 (AC006024.4)
cell division cycle 14C 		ENST00000428251 (AC006024.4-001) 48919765-48926013 processed_pseudogene
ENSG00000225705 (AC004899.3)
 ENST00000424687 (AC004899.3-001) 48846426-48852898 processed_pseudogene
ENSG00000228173 (AC091770.3)
 ENST00000456513 (AC091770.3-001) 48660575-48663305 lincRNA
ENSG00000229165 (GDI2P1)
GDP dissociation inhibitor 2 pseudogene 1 		ENST00000429312 (GDI2P1-001) 48902556-48903891 processed_pseudogene
ENSG00000234686 (AC010971.1)
 ENST00000440455 (AC010971.1-001) 49230137-49254816 lincRNA
ENSG00000279104 (RP11-138B9.1)
 ENST00000624154 (RP11-138B9.1-001) 49760897-49762764 TEC
ENSG00000279578 (RP4-815D20.1)
 ENST00000622993 (RP4-815D20.1-001) 48847766-48851625 TEC

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0000S3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000004668-ENSMUSG00000050830 CGP 10090 11:9191942-11268931
GeneTranscriptPositionBiotype
ENSMUSG00000004668 (Abca13)
ATP-binding cassette, sub-family A (ABC1), member 13 		ENSMUST00000042740 (Abca13-001) 9191942-9684259 protein_coding
ENSMUST00000141233 (Abca13-002) 9191942-9224540 processed_transcript
ENSMUST00000151522 (Abca13-003) 9193451-9256178 protein_coding
ENSMUSG00000050830 (Vwc2)
von Willebrand factor C domain containing 2 		ENSMUST00000056344 (Vwc2-201) 11115851-11266638 protein_coding
ENSMUST00000109681 (Vwc2-001) 11114223-11263526 protein_coding
ENSMUST00000129670 (Vwc2-002) 11114744-11268931 nonsense_mediated_decay
ENSMUST00000154155 (Vwc2-003) 11116485-11131183 processed_transcript
ENSMUSG00000081629 (Eif3s6-ps1)
eukaryotic translation initiation factor 3, subunit 6, pseudogene 1 		ENSMUST00000117907 (Eif3s6-ps1-001) 9737152-9737621 processed_pseudogene
ENSMUSG00000082312 (Gm11996)
predicted gene 11996 		ENSMUST00000117538 (Gm11996-001) 10239337-10240251 processed_pseudogene
ENSMUSG00000084091 (Gm11995)
predicted gene 11995 		ENSMUST00000121099 (Gm11995-001) 10199545-10199772 processed_pseudogene

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000S3_0001ENSG00000042813ENST00000046087ENST00000413331ENST00000419417ENST00000450231ENST00000465922ENST00000491129ENSG00000179869ENST00000411975ENST00000417403ENST00000435451ENST00000435803ENST00000453246ENST00000484268ENST00000544596ENST00000611776ENSG00000188730ENST00000340652ENSG00000218305ENST00000428251ENSG00000225705ENST00000424687ENSG00000228173ENST00000456513ENSG00000229165ENST00000429312ENSG00000234686ENST00000440455ENSG00000279104ENST00000624154ENSG00000279578ENST00000622993CIL_0000S3_0002ENSMUSG00000004668ENSMUST00000042740ENSMUST00000141233ENSMUST00000151522ENSMUSG00000050830ENSMUST00000056344ENSMUST00000109681ENSMUST00000129670ENSMUST00000154155ENSMUSG00000081629ENSMUST00000117907ENSMUSG00000082312ENSMUST00000117538ENSMUSG00000084091ENSMUST00000121099
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000S3_0001ENSG00000042813ENST00000046087ENST00000413331ENST00000419417ENST00000465922ENSG00000179869ENST00000411975ENST00000417403ENST00000435803ENST00000453246ENST00000484268ENST00000544596ENST00000611776ENSG00000188730ENST00000340652ENSG00000218305ENST00000428251ENSG00000225705ENST00000424687ENSG00000228173ENST00000456513ENSG00000229165ENST00000429312ENSG00000234686ENST00000440455ENSG00000279104ENST00000624154ENSG00000279578ENST00000622993CIL_0000S3_0002ENSMUSG00000004668ENSMUST00000042740ENSMUST00000141233ENSMUST00000151522ENSMUSG00000050830ENSMUST00000056344ENSMUST00000109681ENSMUST00000129670ENSMUST00000154155ENSMUSG00000081629ENSMUST00000117907ENSMUSG00000082312ENSMUST00000117538ENSMUSG00000084091ENSMUST00000121099
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000042813 ENST00000046087 N/A N/A N/A N/A N/A N/A N/A 0.078±0.00 N/A N/A N/A N/A N/A 25.279±3.98
ENST00000413331 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.075±0.00 N/A N/A N/A N/A
ENST00000419417 0.056±0.00 0.177±0.00 N/A N/A N/A N/A N/A N/A N/A 0.032±0.00 N/A 0.059±0.00 N/A 32.469±14.71
ENST00000450231 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465922 N/A N/A N/A 0.066±0.03 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000179869 ENST00000411975 N/A 0.083±0.00 N/A 0.029±0.00 0.038±0.00 0.026±0.00 0.020±0.00 0.139±0.00 N/A 1.297±0.00 0.044±0.00 0.102±0.09 0.034±0.00 0.725±0.29
ENST00000417403 0.075±0.00 N/A 0.393±0.00 0.060±0.00 0.032±0.00 N/A N/A 0.113±0.00 N/A 1.455±0.00 N/A N/A N/A N/A
ENST00000435451 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435803 N/A N/A N/A 0.006±0.00 0.002±0.00 0.004±0.00 0.007±0.00 N/A N/A 0.531±0.02 N/A 0.027±0.00 N/A 0.023±0.00
ENST00000453246 N/A 0.071±0.00 N/A 0.089±0.00 0.044±0.00 0.027±0.00 0.048±0.00 0.095±0.00 N/A N/A N/A 0.174±0.00 0.033±0.00 0.364±0.00
ENST00000484268 N/A N/A 0.251±0.00 0.019±0.00 N/A N/A N/A 0.184±0.00 0.065±0.00 N/A N/A 0.050±0.00 N/A N/A
ENST00000544596 N/A N/A N/A N/A N/A N/A N/A N/A 0.023±0.00 0.744±0.00 N/A 0.035±0.04 N/A N/A
ENST00000611776 N/A N/A N/A N/A N/A 0.046±0.00 N/A N/A N/A N/A N/A 0.006±0.00 N/A N/A
ENSG00000188730 ENST00000340652 0.021±0.00 0.112±0.00 0.005±0.00 1.048±0.26 0.020±0.02 0.024±0.01 1.965±0.00 0.039±0.00 0.007±0.01 0.063±0.02 0.033±0.00 0.515±0.42 0.011±0.01 0.087±0.01
ENSG00000218305 ENST00000428251 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.566±0.00
ENSG00000225705 ENST00000424687 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.474±0.32
ENSG00000228173 ENST00000456513 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.695±0.00 N/A N/A N/A 0.278±0.19
ENSG00000229165 ENST00000429312 0.032±0.00 0.016±0.00 N/A 0.008±0.00 N/A 0.052±0.00 N/A 0.016±0.00 0.007±0.00 0.007±0.00 N/A N/A N/A 0.036±0.00
ENSG00000234686 ENST00000440455 0.084±0.00 0.031±0.00 N/A 0.097±0.00 0.083±0.00 0.065±0.00 0.030±0.00 0.015±0.00 N/A N/A 0.028±0.00 N/A N/A 0.085±0.03
ENSG00000279104 ENST00000624154 N/A 0.028±0.00 N/A 0.042±0.00 0.021±0.00 N/A 0.013±0.00 0.027±0.00 N/A 0.204±0.19 N/A 0.103±0.06 N/A 0.043±0.00
ENSG00000279578 ENST00000622993 N/A 0.006±0.00 N/A 0.014±0.01 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004668 ENSMUST00000042740 0.002±0.00 0.007±0.00 0.004±0.00 0.006±0.00 0.007±0.00 0.028±0.01 0.005±0.00 2.233±0.95 0.083±0.06 0.018±0.01 0.002±0.00 0.034±0.02 0.005±0.01 0.035±0.01
ENSMUST00000141233 N/A N/A N/A N/A N/A 0.051±0.02 N/A N/A N/A N/A N/A 0.032±0.02 N/A N/A
ENSMUST00000151522 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.125±0.00 N/A 0.164±0.00 N/A N/A
ENSMUSG00000050830 ENSMUST00000056344 0.180±0.06 0.376±0.27 1.617±0.00 3.653±1.39 0.072±0.05 0.135±0.09 0.544±0.06 0.033±0.01 0.045±0.05 0.179±0.05 0.081±0.05 0.351±0.13 0.125±0.03 0.113±0.00
ENSMUST00000109681 0.092±0.02 0.229±0.10 N/A 0.242±0.06 0.034±0.01 0.094±0.00 0.054±0.02 0.027±0.01 0.010±0.00 0.029±0.00 0.014±0.00 0.110±0.07 N/A 0.049±0.02
ENSMUST00000129670 0.025±0.00 N/A N/A 0.492±0.00 0.021±0.00 N/A N/A 0.024±0.01 0.006±0.00 0.036±0.00 N/A 0.013±0.00 N/A 0.058±0.02
ENSMUST00000154155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.176±0.00 N/A
ENSMUSG00000081629 ENSMUST00000117907 N/A N/A 0.107±0.08 0.037±0.02 N/A N/A N/A N/A 0.132±0.01 N/A 0.087±0.00 0.130±0.06 0.053±0.04 0.824±0.44
ENSMUSG00000082312 ENSMUST00000117538 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000084091 ENSMUST00000121099 1.029±0.00 1.736±0.56 3.311±2.04 3.756±0.65 N/A 2.659±0.00 1.116±0.59 0.720±0.18 0.919±0.52 1.493±0.00 0.495±0.00 4.237±0.85 1.779±0.89 0.641±0.05

Loading