C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000S4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000183696-ENSG00000179869 CGP 9606 7:48088628-48647496
GeneTranscriptPositionBiotype
ENSG00000179869 (ABCA13)
ATP-binding cassette, sub-family A (ABC1), member 13 		ENST00000411975 (ABCA13-003) 48455063-48647496 protein_coding
ENST00000417403 (ABCA13-002) 48171458-48272995 nonsense_mediated_decay
ENST00000435451 (ABCA13-005) 48507872-48520145 protein_coding
ENST00000435803 (ABCA13-001) 48171460-48647495 protein_coding
ENST00000453246 (ABCA13-004) 48376442-48644718 nonsense_mediated_decay
ENST00000484268 (ABCA13-006) 48313067-48404665 retained_intron
ENST00000544596 (ABCA13-008) 48279276-48646283 protein_coding
ENST00000611776 (ABCA13-007) 48279276-48627092 processed_transcript
ENSG00000183696 (UPP1)
uridine phosphorylase 1 		ENST00000331803 (UPP1-001) 48088644-48108733 protein_coding
ENST00000395560 (UPP1-004) 48089265-48108419 nonsense_mediated_decay
ENST00000395564 (UPP1-003) 48089237-48108419 protein_coding
ENST00000416681 (UPP1-009) 48088628-48103407 protein_coding
ENST00000417464 (UPP1-006) 48089376-48108419 nonsense_mediated_decay
ENST00000421046 (UPP1-007) 48089227-48103991 nonsense_mediated_decay
ENST00000432131 (UPP1-002) 48088661-48099714 protein_coding
ENST00000436673 (UPP1-011) 48089265-48103413 protein_coding
ENST00000444999 (UPP1-012) 48089282-48107082 nonsense_mediated_decay
ENST00000457596 (UPP1-010) 48088727-48108302 nonsense_mediated_decay
ENST00000482015 (UPP1-005) 48089344-48108419 processed_transcript
ENST00000495446 (UPP1-008) 48104646-48108415 retained_intron

Homo sapiens Ensembl (GRCh38)

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CIL_0000S4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020407-ENSMUSG00000004668 CGP 10090 11:9118103-9684259
GeneTranscriptPositionBiotype
ENSMUSG00000004668 (Abca13)
ATP-binding cassette, sub-family A (ABC1), member 13 		ENSMUST00000042740 (Abca13-001) 9191942-9684259 protein_coding
ENSMUST00000141233 (Abca13-002) 9191942-9224540 processed_transcript
ENSMUST00000151522 (Abca13-003) 9193451-9256178 protein_coding
ENSMUSG00000020407 (Upp1)
uridine phosphorylase 1 		ENSMUST00000020677 (Upp1-001) 9118103-9136164 protein_coding
ENSMUST00000101525 (Upp1-002) 9118107-9136170 protein_coding
ENSMUST00000130522 (Upp1-003) 9118548-9133322 protein_coding
ENSMUST00000146696 (Upp1-004) 9133015-9136082 retained_intron
ENSMUST00000164791 (Upp1-201) 9118507-9136167 protein_coding
ENSMUST00000166455 (Upp1-008) 9125683-9134749 protein_coding
ENSMUST00000168121 (Upp1-006) 9118627-9119673 retained_intron
ENSMUST00000170444 (Upp1-005) 9118245-9134729 protein_coding
ENSMUST00000172452 (Upp1-007) 9118787-9133251 protein_coding
ENSMUSG00000099857 (AL645994.1)
 ENSMUST00000051371 (AL645994.1-201) 9149778-9150588 pseudogene
ENSMUSG00000101841 (Gm11993)
predicted gene 11993 		ENSMUST00000121861 (Gm11993-001) 9149778-9150597 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000S4_0001ENSG00000179869ENST00000411975ENST00000417403ENST00000435451ENST00000435803ENST00000453246ENST00000484268ENST00000544596ENST00000611776ENSG00000183696ENST00000331803ENST00000395560ENST00000395564ENST00000416681ENST00000417464ENST00000421046ENST00000432131ENST00000436673ENST00000444999ENST00000457596ENST00000482015ENST00000495446CIL_0000S4_0002ENSMUSG00000004668ENSMUST00000042740ENSMUST00000141233ENSMUST00000151522ENSMUSG00000020407ENSMUST00000020677ENSMUST00000101525ENSMUST00000130522ENSMUST00000146696ENSMUST00000164791ENSMUST00000166455ENSMUST00000168121ENSMUST00000170444ENSMUST00000172452ENSMUSG00000099857ENSMUST00000051371ENSMUSG00000101841ENSMUST00000121861
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000S4_0001ENSG00000179869ENST00000411975ENST00000417403ENST00000435803ENST00000453246ENST00000484268ENST00000544596ENST00000611776ENSG00000183696ENST00000331803ENST00000395560ENST00000395564ENST00000417464ENST00000421046ENST00000444999ENST00000457596ENST00000482015ENST00000495446CIL_0000S4_0002ENSMUSG00000004668ENSMUST00000042740ENSMUST00000141233ENSMUST00000151522ENSMUSG00000020407ENSMUST00000020677ENSMUST00000101525ENSMUST00000130522ENSMUST00000146696ENSMUST00000164791ENSMUST00000166455ENSMUST00000170444ENSMUST00000172452ENSMUSG00000099857ENSMUST00000051371ENSMUSG00000101841ENSMUST00000121861
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000179869 ENST00000411975 N/A 0.083±0.00 N/A 0.029±0.00 0.038±0.00 0.026±0.00 0.020±0.00 0.139±0.00 N/A 1.297±0.00 0.044±0.00 0.102±0.09 0.034±0.00 0.725±0.29
ENST00000417403 0.075±0.00 N/A 0.393±0.00 0.060±0.00 0.032±0.00 N/A N/A 0.113±0.00 N/A 1.455±0.00 N/A N/A N/A N/A
ENST00000435451 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435803 N/A N/A N/A 0.006±0.00 0.002±0.00 0.004±0.00 0.007±0.00 N/A N/A 0.531±0.02 N/A 0.027±0.00 N/A 0.023±0.00
ENST00000453246 N/A 0.071±0.00 N/A 0.089±0.00 0.044±0.00 0.027±0.00 0.048±0.00 0.095±0.00 N/A N/A N/A 0.174±0.00 0.033±0.00 0.364±0.00
ENST00000484268 N/A N/A 0.251±0.00 0.019±0.00 N/A N/A N/A 0.184±0.00 0.065±0.00 N/A N/A 0.050±0.00 N/A N/A
ENST00000544596 N/A N/A N/A N/A N/A N/A N/A N/A 0.023±0.00 0.744±0.00 N/A 0.035±0.04 N/A N/A
ENST00000611776 N/A N/A N/A N/A N/A 0.046±0.00 N/A N/A N/A N/A N/A 0.006±0.00 N/A N/A
ENSG00000183696 ENST00000331803 N/A N/A N/A N/A N/A N/A N/A 0.220±0.00 N/A N/A N/A N/A N/A N/A
ENST00000395560 9.663±0.00 N/A N/A 7.632±0.00 N/A 12.226±0.00 N/A N/A N/A 26.683±0.00 N/A 5.249±0.22 13.945±7.96 2.287±0.00
ENST00000395564 4.695±0.00 10.548±0.00 N/A N/A 2.024±0.00 3.436±2.00 N/A 9.230±0.00 3.809±2.97 10.516±0.00 N/A 2.396±0.68 3.767±1.56 1.511±0.00
ENST00000416681 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417464 N/A N/A N/A N/A 8.590±0.00 5.480±0.00 N/A 13.841±0.00 4.577±0.00 N/A 0.483±0.00 N/A 9.594±0.52 4.924±0.00
ENST00000421046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.461±0.07 N/A N/A N/A
ENST00000432131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436673 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.785±0.00 N/A
ENST00000457596 N/A N/A N/A N/A N/A N/A 3.353±0.00 N/A N/A N/A 0.609±0.00 9.716±0.00 9.586±0.00 2.720±0.00
ENST00000482015 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.271±0.99 N/A N/A
ENST00000495446 3.319±0.00 5.582±0.00 0.499±0.00 2.617±0.32 1.370±0.27 0.734±0.00 0.831±0.25 1.487±0.75 0.751±0.14 2.844±0.76 0.218±0.11 1.623±1.13 0.842±0.06 0.915±0.34
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004668 ENSMUST00000042740 0.002±0.00 0.007±0.00 0.004±0.00 0.006±0.00 0.007±0.00 0.028±0.01 0.005±0.00 2.233±0.95 0.083±0.06 0.018±0.01 0.002±0.00 0.034±0.02 0.005±0.01 0.035±0.01
ENSMUST00000141233 N/A N/A N/A N/A N/A 0.051±0.02 N/A N/A N/A N/A N/A 0.032±0.02 N/A N/A
ENSMUST00000151522 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.125±0.00 N/A 0.164±0.00 N/A N/A
ENSMUSG00000020407 ENSMUST00000020677 0.747±0.12 1.370±0.58 0.321±0.06 0.117±0.00 0.888±0.07 N/A 0.468±0.15 1.947±0.00 0.245±0.07 2.549±0.24 0.098±0.00 0.845±0.31 N/A 0.255±0.00
ENSMUST00000101525 2.660±0.73 2.709±0.97 0.520±0.05 0.319±0.00 2.551±0.79 17.799±3.80 1.269±0.63 3.054±1.06 0.625±0.24 6.537±1.32 0.242±0.14 2.549±1.25 39.544±27.18 0.330±0.15
ENSMUST00000130522 1.904±0.00 N/A 1.150±0.00 0.282±0.11 N/A N/A N/A N/A 0.567±0.20 N/A 0.082±0.00 1.360±0.00 23.504±8.73 N/A
ENSMUST00000146696 N/A N/A N/A N/A 1.194±0.15 N/A N/A N/A 0.335±0.00 N/A 0.074±0.02 1.302±0.00 N/A N/A
ENSMUST00000164791 1.432±0.47 0.439±0.00 0.569±0.37 0.355±0.30 1.408±0.54 19.268±3.18 1.293±0.46 4.799±1.07 0.417±0.24 3.880±1.14 N/A 1.851±1.25 29.095±12.38 N/A
ENSMUST00000166455 3.694±0.00 N/A N/A N/A 5.660±0.00 N/A 1.248±0.00 N/A 0.742±0.00 N/A 0.156±0.00 3.489±0.00 N/A 0.313±0.12
ENSMUST00000168121 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170444 N/A N/A N/A 0.601±0.00 N/A N/A N/A N/A 0.606±0.06 N/A N/A N/A N/A 0.213±0.00
ENSMUST00000172452 N/A N/A N/A 0.255±0.00 3.308±0.00 N/A N/A N/A N/A N/A 0.180±0.07 3.296±0.46 51.262±0.00 N/A
ENSMUSG00000099857 ENSMUST00000051371 1.310±0.11 1.199±0.51 1.050±0.01 1.089±0.32 0.545±0.23 0.346±0.14 1.106±0.23 0.990±0.21 0.746±0.34 0.852±0.11 0.075±0.04 1.376±0.86 0.409±0.25 0.448±0.20
ENSMUSG00000101841 ENSMUST00000121861 N/A N/A N/A N/A N/A N/A N/A N/A 0.306±0.26 N/A 0.035±0.00 1.248±0.14 N/A N/A

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