C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family A (ABC1), member 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042740 Abca13-001 ENSMUSG00000004668 10090 + 11:9191942-9684259 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042740
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042740 0.002±0.00 0.007±0.00 0.004±0.00 0.006±0.00 0.007±0.00 0.028±0.01 0.005±0.00 2.233±0.95 0.083±0.06 0.018±0.01 0.002±0.00 0.034±0.02 0.005±0.01 0.035±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000S4 CIL_0000S4_0002 CGP 11:9118103-9684259
CIL_0000S3 CIL_0000S3_0002 CGP 11:9191942-11268931

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component
GO:0006200 IEA ATP catabolic process
GO:0006810 IEA transport
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0016887 IEA ATPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000411975 ABCA13-003 protein_coding Homo_sapiens 0 1905
ENST00000417403 ABCA13-002 nonsense_mediated_decay Homo_sapiens 0 701
ENST00000435803 ABCA13-001 protein_coding Homo_sapiens 0 3494
ENST00000453246 ABCA13-004 nonsense_mediated_decay Homo_sapiens 0 1672
ENST00000484268 ABCA13-006 retained_intron Homo_sapiens 0 2189
ENST00000544596 ABCA13-008 protein_coding Homo_sapiens 0 3142
ENST00000611776 ABCA13-007 processed_transcript Homo_sapiens 0 3142

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