C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: hyaluronan and proteoglycan link protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004894 Hapln2 10090 - 3:88021750-88027583 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000005014 Hapln2-001 88022061-88027478 protein_coding
  ENSMUST00000160150 Hapln2-003 88023534-88027492 nonsense_mediated_decay
  ENSMUST00000160737 Hapln2-002 88021750-88027583 retained_intron
  ENSMUST00000162352 Hapln2-004 88022638-88023673 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005014ENSMUST00000160150ENSMUST00000160737ENSMUST00000162352
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005014 0.065±0.00 0.018±0.00 0.012±0.00 0.117±0.00 0.035±0.01 0.017±0.00 0.018±0.00 N/A N/A 0.103±0.01 0.113±0.05 0.035±0.00 1.566±0.83
ENSMUST00000160150 N/A 0.097±0.04 0.022±0.00 9.197±0.00 0.114±0.00 N/A N/A N/A N/A 0.144±0.08 N/A N/A N/A
ENSMUST00000160737 0.044±0.02 0.039±0.00 N/A 0.215±0.09 0.043±0.01 0.011±0.00 0.012±0.00 0.005±0.00 0.067±0.02 0.031±0.01 0.127±0.10 0.035±0.02 1.486±0.15
ENSMUST00000162352 N/A 0.211±0.04 0.017±0.00 N/A 0.113±0.04 N/A N/A 0.021±0.00 0.166±0.00 N/A 0.230±0.08 0.357±0.33 3.341±1.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000850 CIL_000850_0002 VISTA 3:87682625-88286876
CIL_0008JO CIL_0008JO_0002 VISTA 3:87838105-88441065

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005540 IEA hyaluronic acid binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0007155 IEA cell adhesion
GO:0008065 IMP establishment of blood-nerve barrier
GO:0031012 IDA extracellular matrix
GO:0085029 IMP extracellular matrix assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003903 hapln2 hyaluronan and proteoglycan link protein 2 protein_coding Danio_rerio
ENSG00000132702 HAPLN2 hyaluronan and proteoglycan link protein 2 protein_coding Homo_sapiens

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