C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hyaluronan and proteoglycan link protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160150 Hapln2-003 ENSMUSG00000004894 10090 - 3:88023534-88027492 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastMuscleENSMUST00000160150
Transcript ID Adrenal Bladder Brain Breast Muscle
ENSMUST00000160150 0.097±0.04 0.022±0.00 9.197±0.00 0.114±0.00 0.144±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000850 CIL_000850_0002 VISTA 3:87682625-88286876
CIL_0008JO CIL_0008JO_0002 VISTA 3:87838105-88441065

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008065 IMP establishment of blood-nerve barrier
GO:0031012 IDA extracellular matrix
GO:0085029 IMP extracellular matrix assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255039 HAPLN2-001 protein_coding Homo_sapiens 0 425
ENST00000456112 HAPLN2-004 protein_coding Homo_sapiens 0 425
ENST00000494218 HAPLN2-005 processed_transcript Homo_sapiens 1e-32 145

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