C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal RNA adenine dimethylase domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004896 Rrnad1 10090 - 3:87922601-87930717 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000005016 Rrnad1-001 87922905-87930144 protein_coding
  ENSMUST00000159091 Rrnad1-004 87922601-87930127 retained_intron
  ENSMUST00000159831 Rrnad1-002 87923663-87930144 retained_intron
  ENSMUST00000159967 Rrnad1-008 87925053-87927092 retained_intron
  ENSMUST00000160068 Rrnad1-009 87923659-87925275 processed_transcript
  ENSMUST00000160074 Rrnad1-006 87923658-87928258 protein_coding
  ENSMUST00000160143 Rrnad1-010 87923783-87930583 protein_coding
  ENSMUST00000160648 Rrnad1-003 87922601-87930127 nonsense_mediated_decay
  ENSMUST00000161014 Rrnad1-005 87923663-87930717 retained_intron
  ENSMUST00000161471 Rrnad1-007 87925226-87927708 processed_transcript
  ENSMUST00000164439 Rrnad1-012 87925256-87930138 nonsense_mediated_decay
  ENSMUST00000168070 Rrnad1-011 87923316-87929361 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryENSMUST00000005016ENSMUST00000159091ENSMUST00000159831ENSMUST00000160648
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENSMUST00000005016 N/A 7.173±1.06 11.539±0.00 6.880±0.77 8.294±1.67 N/A 5.531±0.00 4.762±1.52 7.708±1.57 N/A 10.364±2.11
ENSMUST00000159091 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.667±0.00 7.244±0.00
ENSMUST00000159831 N/A 5.648±0.02 N/A N/A N/A N/A N/A N/A N/A N/A 9.257±1.46
ENSMUST00000160648 7.064±1.90 6.261±1.09 11.038±0.52 6.601±0.85 N/A 3.046±0.00 4.987±0.41 N/A 5.902±0.00 2.721±0.00 8.513±1.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000850 CIL_000850_0002 VISTA 3:87682625-88286876
CIL_0008JO CIL_0008JO_0002 VISTA 3:87838105-88441065

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031001 rrnad1 ribosomal RNA adenine dimethylase domain containing 1 protein_coding Danio_rerio
ENSDARG00000089033 rrnad1 ribosomal RNA adenine dimethylase domain containing 1 protein_coding Danio_rerio
ENSG00000143303 RRNAD1 ribosomal RNA adenine dimethylase domain containing 1 protein_coding Homo_sapiens

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