C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin fusion degradation 1 like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000005262 Ufd1l 10090 + 16:18811779-18835261 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000005394 Ufd1l-201 18812294-18835261 protein_coding
  ENSMUST00000115578 Ufd1l-001 18811832-18835256 protein_coding
  ENSMUST00000163695 Ufd1l-003 18812356-18825042 nonsense_mediated_decay
  ENSMUST00000164795 Ufd1l-004 18812294-18815910 processed_transcript
  ENSMUST00000166352 Ufd1l-005 18823226-18834254 retained_intron
  ENSMUST00000168822 Ufd1l-008 18811779-18815357 protein_coding
  ENSMUST00000170325 Ufd1l-007 18827249-18834404 retained_intron
  ENSMUST00000171789 Ufd1l-009 18812321-18827697 nonsense_mediated_decay
  ENSMUST00000172013 Ufd1l-002 18811824-18834310 nonsense_mediated_decay
  ENSMUST00000172451 Ufd1l-006 18827061-18828455 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005394ENSMUST00000115578ENSMUST00000164795ENSMUST00000166352ENSMUST00000168822ENSMUST00000171789ENSMUST00000172013
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005394 21.498±3.82 12.882±3.27 21.171±1.03 15.730±3.20 11.331±2.17 6.983±1.19 13.854±0.69 12.115±1.62 10.216±3.76 8.465±1.28 21.586±1.09 15.666±7.23 14.123±4.70 11.247±0.00
ENSMUST00000115578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.189±1.39
ENSMUST00000164795 N/A N/A N/A N/A N/A N/A N/A 35.058±0.00 23.504±0.00 N/A N/A N/A N/A N/A
ENSMUST00000166352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.344±0.00 N/A
ENSMUST00000168822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 244.994±8.85
ENSMUST00000171789 N/A N/A N/A 21.001±0.00 N/A N/A N/A N/A N/A N/A N/A 32.527±0.00 20.093±0.96 34.332±0.00
ENSMUST00000172013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.750±0.00 20.164±8.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095F CIL_00095F_0002 VISTA 16:18254168-18857637
CIL_00099J CIL_00099J_0002 VISTA 16:18285741-18886132
CIL_0008BW CIL_0008BW_0002 VISTA 16:18293232-18893684
CIL_0000RN CIL_0000RN_0002 CGP 16:18776847-18811987
CIL_0006PK CIL_0006PK_0002 CGP 16:18780447-18835261

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005102 IEA receptor binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0032403 IEA protein complex binding
GO:0043161 IEA proteasome-mediated ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010051 ufd1l ubiquitin fusion degradation 1-like protein_coding Danio_rerio
ENSG00000070010 UFD1L ubiquitin fusion degradation 1 like (yeast) protein_coding Homo_sapiens

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