C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000RN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000043716-ENSDARG00000043720 CGP 7955 8:4906305-4969264
GeneTranscriptPositionBiotype
ENSDARG00000043716 (cldn5a)
claudin 5a 		ENSDART00000064197 (cldn5a-001) 4906305-4907861 protein_coding
ENSDARG00000043720 (cdc45)
CDC45 cell division cycle 45 homolog (S. cerevisiae) 		ENSDART00000064201 (cdc45-001) 4942546-4969264 protein_coding
ENSDARG00000062612 (dhx37)
DEAH (Asp-Glu-Ala-His) box polypeptide 37 		ENSDART00000090731 (dhx37-001) 4717094-4774591 protein_coding
ENSDART00000127153 (dhx37-201) 4717094-4947467 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0000RN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000041378-ENSMUSG00000000028 CGP 10090 16:18776847-18811987
GeneTranscriptPositionBiotype
ENSMUSG00000000028 (Cdc45)
cell division cycle 45 		ENSMUST00000000028 (Cdc45-001) 18780447-18811972 protein_coding
ENSMUST00000096990 (Cdc45-003) 18780453-18811626 protein_coding
ENSMUST00000115585 (Cdc45-002) 18807356-18811987 protein_coding
ENSMUSG00000005262 (Ufd1l)
ubiquitin fusion degradation 1 like 		ENSMUST00000005394 (Ufd1l-201) 18812294-18835261 protein_coding
ENSMUST00000115578 (Ufd1l-001) 18811832-18835256 protein_coding
ENSMUST00000163695 (Ufd1l-003) 18812356-18825042 nonsense_mediated_decay
ENSMUST00000164795 (Ufd1l-004) 18812294-18815910 processed_transcript
ENSMUST00000166352 (Ufd1l-005) 18823226-18834254 retained_intron
ENSMUST00000168822 (Ufd1l-008) 18811779-18815357 protein_coding
ENSMUST00000170325 (Ufd1l-007) 18827249-18834404 retained_intron
ENSMUST00000171789 (Ufd1l-009) 18812321-18827697 nonsense_mediated_decay
ENSMUST00000172013 (Ufd1l-002) 18811824-18834310 nonsense_mediated_decay
ENSMUST00000172451 (Ufd1l-006) 18827061-18828455 protein_coding
ENSMUSG00000041378 (Cldn5)
claudin 5 		ENSMUST00000043577 (Cldn5-201) 18776847-18778260 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000RN_0001ENSDARG00000043716ENSDART00000064197ENSDARG00000043720ENSDART00000064201ENSDARG00000062612ENSDART00000090731ENSDART00000127153CIL_0000RN_0002ENSMUSG00000000028ENSMUST00000000028ENSMUST00000096990ENSMUST00000115585ENSMUSG00000005262ENSMUST00000005394ENSMUST00000115578ENSMUST00000163695ENSMUST00000164795ENSMUST00000166352ENSMUST00000168822ENSMUST00000170325ENSMUST00000171789ENSMUST00000172013ENSMUST00000172451ENSMUSG00000041378ENSMUST00000043577
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000RN_0001ENSDARG00000043716ENSDART00000064197ENSDARG00000043720ENSDART00000064201ENSDARG00000062612ENSDART00000090731ENSDART00000127153CIL_0000RN_0002ENSMUSG00000000028ENSMUST00000000028ENSMUST00000096990ENSMUSG00000005262ENSMUST00000005394ENSMUST00000115578ENSMUST00000164795ENSMUST00000166352ENSMUST00000168822ENSMUST00000171789ENSMUST00000172013ENSMUSG00000041378ENSMUST00000043577
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000043716 ENSDART00000064197 N/A N/A N/A 12.908±0.00 N/A N/A 0.868±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000043720 ENSDART00000064201 N/A N/A N/A 0.406±0.40 N/A N/A 0.486±0.06 5.258±7.10 0.484±0.00 N/A 0.123±0.00 N/A N/A N/A
ENSDARG00000062612 ENSDART00000090731 N/A N/A N/A 1.404±1.56 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000127153 N/A N/A N/A 0.548±0.00 N/A N/A 4.100±0.42 6.504±0.00 2.269±0.00 N/A 2.202±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000028 ENSMUST00000000028 4.487±1.42 N/A N/A 6.242±2.04 2.145±0.28 2.183±0.00 N/A N/A 23.910±15.60 N/A N/A 4.069±1.19 10.418±4.30 9.723±2.01
ENSMUST00000096990 3.955±0.00 4.448±0.47 N/A 6.424±1.02 3.982±0.70 4.061±0.95 N/A N/A 12.978±5.00 2.788±0.00 N/A 8.531±1.86 8.920±3.03 12.292±0.99
ENSMUST00000115585 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000005262 ENSMUST00000005394 21.498±3.82 12.882±3.27 21.171±1.03 15.730±3.20 11.331±2.17 6.983±1.19 13.854±0.69 12.115±1.62 10.216±3.76 8.465±1.28 21.586±1.09 15.666±7.23 14.123±4.70 11.247±0.00
ENSMUST00000115578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.189±1.39
ENSMUST00000163695 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164795 N/A N/A N/A N/A N/A N/A N/A 35.058±0.00 23.504±0.00 N/A N/A N/A N/A N/A
ENSMUST00000166352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.344±0.00 N/A
ENSMUST00000168822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 244.994±8.85
ENSMUST00000170325 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171789 N/A N/A N/A 21.001±0.00 N/A N/A N/A N/A N/A N/A N/A 32.527±0.00 20.093±0.96 34.332±0.00
ENSMUST00000172013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.750±0.00 20.164±8.27
ENSMUST00000172451 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000041378 ENSMUST00000043577 95.102±57.47 44.317±10.90 23.638±5.19 42.123±5.26 44.548±19.08 11.188±1.09 15.963±1.20 15.622±1.56 6.195±2.26 392.928±32.39 5.721±2.13 58.599±17.01 15.762±5.23 4.956±0.55

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