C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin fusion degradation 1 like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172013 Ufd1l-002 ENSMUSG00000005262 10090 + 16:18811824-18834310 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaTestisENSMUST00000172013
Transcript ID Placenta Testis
ENSMUST00000172013 8.750±0.00 20.164±8.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095F CIL_00095F_0002 VISTA 16:18254168-18857637
CIL_00099J CIL_00099J_0002 VISTA 16:18285741-18886132
CIL_0008BW CIL_0008BW_0002 VISTA 16:18293232-18893684
CIL_0000RN CIL_0000RN_0002 CGP 16:18776847-18811987
CIL_0006PK CIL_0006PK_0002 CGP 16:18780447-18835261

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263202 UFD1L-001 protein_coding Homo_sapiens 0 966
ENST00000399523 UFD1L-003 protein_coding Homo_sapiens 6e-40 169
ENST00000421968 UFD1L-006 protein_coding Homo_sapiens 0 569
ENST00000459854 UFD1L-002 retained_intron Homo_sapiens 0 1000
ENST00000484101 UFD1L-005 processed_transcript Homo_sapiens 8e-38 161
ENST00000489406 UFD1L-010 retained_intron Homo_sapiens 6e-40 169
ENST00000494054 UFD1L-009 protein_coding Homo_sapiens 2e-37 159
ENST00000583051 RP11-552O4.2-001 processed_pseudogene Homo_sapiens 0 741

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