C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin fusion degradation 1 like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115578 Ufd1l-001 ENSMUSG00000005262 10090 + 16:18811832-18835256 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENSMUST00000115578
Transcript ID Testis
ENSMUST00000115578 10.189±1.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095F CIL_00095F_0002 VISTA 16:18254168-18857637
CIL_00099J CIL_00099J_0002 VISTA 16:18285741-18886132
CIL_0008BW CIL_0008BW_0002 VISTA 16:18293232-18893684
CIL_0000RN CIL_0000RN_0002 CGP 16:18776847-18811987
CIL_0006PK CIL_0006PK_0002 CGP 16:18780447-18835261

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005102 IEA receptor binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0032403 IEA protein complex binding
GO:0043161 IEA proteasome-mediated ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263202 UFD1L-001 protein_coding Homo_sapiens 0 1223
ENST00000399523 UFD1L-003 protein_coding Homo_sapiens 0 972
ENST00000421968 UFD1L-006 protein_coding Homo_sapiens 0 217
ENST00000459854 UFD1L-002 retained_intron Homo_sapiens 3e-39 169
ENST00000484101 UFD1L-005 processed_transcript Homo_sapiens 0 601
ENST00000489406 UFD1L-010 retained_intron Homo_sapiens 0 534
ENST00000494054 UFD1L-009 protein_coding Homo_sapiens 0 525
ENST00000583051 RP11-552O4.2-001 processed_pseudogene Homo_sapiens 0 922

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