C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000005609 Ctr9 10090 + 7:111028951-111056377 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000005749 Ctr9-001 111028951-111056377 protein_coding
  ENSMUST00000123681 Ctr9-008 111050993-111052370 processed_transcript
  ENSMUST00000140220 Ctr9-006 111034036-111035392 retained_intron
  ENSMUST00000143818 Ctr9-005 111030215-111034056 processed_transcript
  ENSMUST00000146558 Ctr9-007 111046310-111046822 retained_intron
  ENSMUST00000146709 Ctr9-004 111029013-111030809 retained_intron
  ENSMUST00000152019 Ctr9-002 111028995-111047647 retained_intron
  ENSMUST00000157025 Ctr9-003 111046310-111047979 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005749ENSMUST00000123681ENSMUST00000143818
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005749 14.781±7.85 3.410±0.36 13.169±1.28 14.671±3.85 9.161±1.06 5.615±1.21 3.256±0.12 7.106±0.23 6.774±3.63 5.204±0.43 3.933±0.17 13.068±3.35 36.539±13.62 11.444±0.23
ENSMUST00000123681 N/A N/A N/A 22.777±0.00 N/A N/A N/A N/A N/A N/A N/A 36.261±0.00 59.299±0.00 72.717±0.00
ENSMUST00000143818 N/A N/A N/A 22.808±0.00 N/A N/A N/A N/A N/A N/A N/A 41.063±0.00 102.528±25.06 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JB CIL_0004JB_0002 CGP 7:110868266-111056377
CIL_000417 CIL_000417_0003 CGP 7:111028951-111083030

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0001711 IMP endodermal cell fate commitment
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007259 IMP JAK-STAT cascade
GO:0010390 IEA histone monoubiquitination
GO:0016055 IEA Wnt signaling pathway
GO:0016593 ISS Cdc73/Paf1 complex
GO:0019827 IMP stem cell maintenance
GO:0032968 ISS positive regulation of transcription elongation from RNA polymerase II promoter
GO:0033523 IEA histone H2B ubiquitination
GO:0035327 IDA transcriptionally active chromatin
GO:0042169 IDA SH2 domain binding
GO:0045638 ISS negative regulation of myeloid cell differentiation
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0051571 ISS positive regulation of histone H3-K4 methylation
GO:0070102 IMP interleukin-6-mediated signaling pathway
GO:0071222 IDA cellular response to lipopolysaccharide
GO:0080182 ISS histone H3-K4 trimethylation
GO:2001162 ISS positive regulation of histone H3-K79 methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009170 ctr9 Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000198730 CTR9 CTR9, Paf1/RNA polymerase II complex component protein_coding Homo_sapiens

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