C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000417_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000009170-ENSDARG00000020377 CGP 7955 7:67288488-67347861
GeneTranscriptPositionBiotype
ENSDARG00000009170 (ctr9)
Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 		ENSDART00000021317 (ctr9-201) 67288488-67326081 protein_coding
ENSDARG00000020377 (eif4g2a)
eukaryotic translation initiation factor 4, gamma 2a 		ENSDART00000027616 (eif4g2a-201) 67327490-67347861 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_000417_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000198730-ENSG00000110321 CGP 9606 11:10750987-10809110
GeneTranscriptPositionBiotype
ENSG00000110321 (EIF4G2)
eukaryotic translation initiation factor 4 gamma, 2 		ENST00000339995 (EIF4G2-001) 10797054-10809110 protein_coding
ENST00000396525 (EIF4G2-002) 10797170-10808708 protein_coding
ENST00000524932 (EIF4G2-003) 10803561-10808940 protein_coding
ENST00000525606 (EIF4G2-031) 10797728-10799626 retained_intron
ENST00000525681 (EIF4G2-008) 10797053-10807462 protein_coding
ENST00000525972 (EIF4G2-013) 10804364-10808923 processed_transcript
ENST00000525995 (EIF4G2-018) 10804985-10808630 processed_transcript
ENST00000526148 (EIF4G2-006) 10797050-10807973 protein_coding
ENST00000527015 (EIF4G2-023) 10803942-10804606 retained_intron
ENST00000527419 (EIF4G2-015) 10804297-10808923 protein_coding
ENST00000527526 (EIF4G2-020) 10804927-10807876 protein_coding
ENST00000528562 (EIF4G2-011) 10804372-10808924 nonsense_mediated_decay
ENST00000528839 (EIF4G2-029) 10798992-10800482 protein_coding
ENST00000530211 (EIF4G2-012) 10804916-10808923 protein_coding
ENST00000530564 (EIF4G2-027) 10800531-10801588 retained_intron
ENST00000530702 (EIF4G2-010) 10804946-10808929 protein_coding
ENST00000531180 (EIF4G2-028) 10800092-10801015 protein_coding
ENST00000531416 (EIF4G2-005) 10801055-10808084 protein_coding
ENST00000531507 (EIF4G2-014) 10804340-10808923 processed_transcript
ENST00000531647 (EIF4G2-021) 10802060-10807334 nonsense_mediated_decay
ENST00000532082 (EIF4G2-004) 10803261-10808309 protein_coding
ENST00000532120 (EIF4G2-026) 10797712-10802346 processed_transcript
ENST00000532152 (EIF4G2-022) 10804292-10806263 retained_intron
ENST00000532349 (EIF4G2-024) 10803512-10804538 retained_intron
ENST00000532383 (EIF4G2-007) 10797054-10808028 retained_intron
ENST00000532570 (EIF4G2-009) 10804381-10808940 protein_coding
ENST00000533485 (EIF4G2-019) 10806503-10807677 retained_intron
ENST00000534246 (EIF4G2-016) 10807074-10808919 retained_intron
ENST00000534272 (EIF4G2-030) 10798992-10800295 processed_transcript
ENST00000534470 (EIF4G2-032) 10798743-10799361 retained_intron
ENST00000534605 (EIF4G2-025) 10804181-10805949 nonsense_mediated_decay
ENSG00000198730 (CTR9)
CTR9, Paf1/RNA polymerase II complex component 		ENST00000361367 (CTR9-001) 10750987-10779743 protein_coding
ENST00000524523 (CTR9-002) 10751452-10763734 protein_coding
ENST00000526874 (CTR9-003) 10766334-10768476 retained_intron
ENST00000529355 (CTR9-004) 10767051-10768459 retained_intron
ENST00000529898 (CTR9-005) 10772507-10774309 retained_intron
ENSG00000238622 (SNORD97)
small nucleolar RNA, C/D box 97 		ENST00000459187 (SNORD97-201) 10801467-10801608 snoRNA

Homo sapiens Ensembl (GRCh38)

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CIL_000417_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000005609-ENSMUSG00000005610 CGP 10090 7:111028951-111083030
GeneTranscriptPositionBiotype
ENSMUSG00000005609 (Ctr9)
Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 		ENSMUST00000005749 (Ctr9-001) 111028951-111056377 protein_coding
ENSMUST00000123681 (Ctr9-008) 111050993-111052370 processed_transcript
ENSMUST00000140220 (Ctr9-006) 111034036-111035392 retained_intron
ENSMUST00000143818 (Ctr9-005) 111030215-111034056 processed_transcript
ENSMUST00000146558 (Ctr9-007) 111046310-111046822 retained_intron
ENSMUST00000146709 (Ctr9-004) 111029013-111030809 retained_intron
ENSMUST00000152019 (Ctr9-002) 111028995-111047647 retained_intron
ENSMUST00000157025 (Ctr9-003) 111046310-111047979 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000417_0001ENSDARG00000009170ENSDART00000021317ENSDARG00000020377ENSDART00000027616CIL_000417_0002ENSG00000110321ENST00000339995ENST00000396525ENST00000524932ENST00000525606ENST00000525681ENST00000525972ENST00000525995ENST00000526148ENST00000527015ENST00000527419ENST00000527526ENST00000528562ENST00000528839ENST00000530211ENST00000530564ENST00000530702ENST00000531180ENST00000531416ENST00000531507ENST00000531647ENST00000532082ENST00000532120ENST00000532152ENST00000532349ENST00000532383ENST00000532570ENST00000533485ENST00000534246ENST00000534272ENST00000534470ENST00000534605ENSG00000198730ENST00000361367ENST00000524523ENST00000526874ENST00000529355ENST00000529898ENSG00000238622ENST00000459187CIL_000417_0003ENSMUSG00000005609ENSMUST00000005749ENSMUST00000123681ENSMUST00000140220ENSMUST00000143818ENSMUST00000146558ENSMUST00000146709ENSMUST00000152019ENSMUST00000157025
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000417_0001ENSDARG00000009170ENSDART00000021317ENSDARG00000020377ENSDART00000027616CIL_000417_0002ENSG00000110321ENST00000339995ENST00000396525ENST00000525681ENST00000531416ENST00000531647ENSG00000198730ENST00000361367ENST00000526874ENST00000529898ENSG00000238622ENST00000459187CIL_000417_0003ENSMUSG00000005609ENSMUST00000005749ENSMUST00000123681ENSMUST00000143818
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000009170 ENSDART00000021317 N/A N/A N/A 6.033±3.60 N/A N/A 6.112±0.30 9.762±0.00 2.366±0.00 N/A 5.084±0.00 N/A N/A N/A
ENSDARG00000020377 ENSDART00000027616 N/A N/A N/A 16.515±8.98 N/A N/A 9.444±5.45 20.256±4.47 7.616±0.00 N/A 16.559±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000110321 ENST00000339995 40.957±0.00 26.885±0.00 N/A 46.259±25.31 50.037±24.24 64.847±46.79 70.773±36.89 43.084±24.16 36.224±6.33 55.679±39.51 50.067±15.68 65.679±23.52 82.750±10.20 59.757±42.38
ENST00000396525 27.972±0.00 22.252±0.00 N/A 17.313±0.00 30.516±0.00 27.161±0.00 63.598±0.00 29.066±19.22 20.588±0.00 41.293±0.00 30.212±0.00 34.416±17.99 54.282±35.72 41.607±0.00
ENST00000524932 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525681 33.416±0.00 59.553±0.00 19.472±0.00 26.525±0.00 36.834±7.78 42.137±1.25 13.446±0.00 23.883±14.70 13.583±0.00 45.899±0.00 26.979±10.27 47.405±2.09 55.434±4.94 53.800±21.30
ENST00000525972 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525995 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527015 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527419 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527526 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528839 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530564 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531416 N/A N/A 25.541±0.00 N/A N/A N/A N/A N/A N/A N/A 24.317±0.00 N/A N/A N/A
ENST00000531507 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531647 N/A N/A 121.334±0.00 56.693±0.00 N/A N/A N/A N/A 123.450±0.00 100.163±0.00 N/A 113.422±0.00 N/A N/A
ENST00000532082 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532120 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532349 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532570 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533485 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534246 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534470 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534605 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000198730 ENST00000361367 6.702±0.00 8.680±0.00 0.886±0.00 3.385±2.09 7.520±0.00 3.518±3.16 3.130±2.51 8.392±5.55 1.952±1.00 2.606±0.87 2.338±1.71 5.315±2.58 7.158±2.22 19.155±4.07
ENST00000524523 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526874 N/A N/A N/A 3.455±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.206±0.00 9.914±0.00
ENSG00000238622 ENST00000459187 N/A N/A N/A N/A 5775.230±0.00 9784.760±0.00 N/A 1432.110±0.00 6404.880±0.00 N/A N/A 5003.110±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005609 ENSMUST00000005749 14.781±7.85 3.410±0.36 13.169±1.28 14.671±3.85 9.161±1.06 5.615±1.21 3.256±0.12 7.106±0.23 6.774±3.63 5.204±0.43 3.933±0.17 13.068±3.35 36.539±13.62 11.444±0.23
ENSMUST00000123681 N/A N/A N/A 22.777±0.00 N/A N/A N/A N/A N/A N/A N/A 36.261±0.00 59.299±0.00 72.717±0.00
ENSMUST00000140220 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143818 N/A N/A N/A 22.808±0.00 N/A N/A N/A N/A N/A N/A N/A 41.063±0.00 102.528±25.06 N/A
ENSMUST00000146558 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000157025 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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