C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 4 (anion exchanger), member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000006574 Slc4a1 10090 - 11:102348824-102366203 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000006749 Slc4a1-001 102348824-102365280 protein_coding
  ENSMUST00000128405 Slc4a1-002 102360195-102365247 processed_transcript
  ENSMUST00000145636 Slc4a1-003 102360162-102363704 processed_transcript
  ENSMUST00000149993 Slc4a1-004 102359082-102360568 processed_transcript
  ENSMUST00000151050 Slc4a1-005 102361387-102366203 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000006749ENSMUST00000145636
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006749 0.038±0.02 0.015±0.01 0.004±0.00 0.387±0.26 0.026±0.01 0.068±0.02 0.984±0.79 222.816±252.62 0.461±0.20 0.016±0.01 0.035±0.02 19.851±16.72 0.041±0.00
ENSMUST00000145636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.069±0.00 190.769±140.52 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0004D5 CIL_0004D5_0003 CGP 11:102304560-102366203
CIL_0005JA CIL_0005JA_0002 CGP 11:102348824-102402555

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005452 ISS inorganic anion exchanger activity
GO:0005515 IPI protein binding
GO:0005887 ISS integral component of plasma membrane
GO:0006821 IDA chloride transport
GO:0008022 IEA protein C-terminus binding
GO:0015106 ISS bicarbonate transmembrane transporter activity
GO:0015108 IDA chloride transmembrane transporter activity
GO:0015301 ISS anion:anion antiporter activity
GO:0015701 ISS bicarbonate transport
GO:0016020 IDA membrane
GO:0016323 IDA basolateral plasma membrane
GO:0030018 ISS Z disc
GO:0030506 IEA ankyrin binding
GO:0030863 IDA cortical cytoskeleton
GO:0042803 IEA protein homodimerization activity
GO:0070062 IEA extracellular vesicular exosome
GO:0072562 IEA blood microparticle
GO:1902476 IDA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012881 slc4a1a solute carrier family 4, anion exchanger, member 1a protein_coding Danio_rerio
ENSDARG00000024560 slc4a1b solute carrier family 4, anion exchanger, member 1b protein_coding Danio_rerio
ENSG00000004939 SLC4A1 solute carrier family 4 (anion exchanger), member 1 (Diego blood group) protein_coding Homo_sapiens

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