C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 4 (anion exchanger), member 1 (Diego blood group)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000004939 SLC4A1 9606 - 17:44248385-44268141 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262418 SLC4A1-001 44248385-44268141 protein_coding
  ENST00000399246 SLC4A1-201 44248390-44268134 protein_coding
  ENST00000471005 SLC4A1-003 44260404-44262066 processed_transcript
  ENST00000497360 SLC4A1-002 44257193-44268124 retained_intron
  ENST00000498270 SLC4A1-004 44260805-44268141 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262418ENST00000399246ENST00000497360ENST00000498270
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262418 1.683±0.00 0.106±0.00 0.055±0.00 0.149±0.00 3.112±0.00 0.042±0.00 0.122±0.00 0.077±0.00 13.831±0.00 N/A 0.013±0.00 3.801±1.20 0.869±0.00
ENST00000399246 N/A 0.082±0.00 0.040±0.03 0.020±0.00 0.658±0.00 N/A N/A 0.026±0.00 N/A 0.097±0.00 0.051±0.00 5.307±0.00 0.342±0.08
ENST00000497360 0.907±0.00 0.073±0.00 N/A N/A N/A 0.029±0.00 N/A N/A 0.048±0.00 N/A 0.130±0.11 N/A N/A
ENST00000498270 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.618±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0001 VISTA 17:43966083-44567774
CIL_0004D5 CIL_0004D5_0002 CGP 17:44205033-44268141
CIL_0007ST CIL_0007ST_0001 VISTA 17:44247434-44848646
CIL_0005JA CIL_0005JA_0001 CGP 17:44248385-44318671

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005215 IEA transporter activity
GO:0005452 IDA:IEA inorganic anion exchanger activity
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005887 IDA integral component of plasma membrane
GO:0006810 IEA transport
GO:0006811 TAS ion transport
GO:0006820 IDA:IEA anion transport
GO:0006821 ISS chloride transport
GO:0006873 TAS cellular ion homeostasis
GO:0008022 IEA protein C-terminus binding
GO:0008509 TAS:IEA anion transmembrane transporter activity
GO:0015106 IDA bicarbonate transmembrane transporter activity
GO:0015108 ISS chloride transmembrane transporter activity
GO:0015301 IDA anion:anion antiporter activity
GO:0015701 IDA bicarbonate transport
GO:0016020 IEA membrane
GO:0016021 NAS:IEA integral component of membrane
GO:0016323 IDA basolateral plasma membrane
GO:0030018 ISS Z disc
GO:0030506 IPI ankyrin binding
GO:0030863 IDA cortical cytoskeleton
GO:0042803 IPI protein homodimerization activity
GO:0043495 TAS protein anchor
GO:0044281 TAS small molecule metabolic process
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome
GO:0072562 IDA blood microparticle
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012881 slc4a1a solute carrier family 4, anion exchanger, member 1a protein_coding Danio_rerio
ENSDARG00000024560 slc4a1b solute carrier family 4, anion exchanger, member 1b protein_coding Danio_rerio
ENSMUSG00000006574 Slc4a1 solute carrier family 4 (anion exchanger), member 1 protein_coding Mus_musculus

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